Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 49-595 |
| Cow position: | chr23:24647905-24648459 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 272-595 |
| Cow position: | chr23:24622864-24623187 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 281-582 |
| Cow position: | chr23:25703159-25702855 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 296-595 |
| Cow position: | chr23:25617586-25617885 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-581 |
| Cow position: | chr23:24630200-24630461 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 316-571 |
| Cow position: | chr23:25691585-25691330 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 316-572 |
| Cow position: | chr23:24527383-24527124 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 317-577 |
| Cow position: | chr23:24538699-24538439 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-595 |
| Cow position: | chr23:25658231-25658509 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-578 |
| Cow position: | chr23:24568090-24567830 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-579 |
| Cow position: | chr23:25730705-25730444 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 183, 187 |
| Conread position: | 591-734 |
| Cow position: | chr23:24649934-24650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 125 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 732-1308 |
| Cow position: | chr23:24653863-24654440 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 530, 0 |
| Conread position: | 828-1250 |
| Cow position: | chr23:25724207-25723779 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 387 |
| Conread position: | 877-1161 |
| Cow position: | chr23:25660463-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 877-1233 |
| Cow position: | chr23:25626591-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 885-1160 |
| Cow position: | chr23:24560401-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 885-1227 |
| Cow position: | chr23:24639789-24640128 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 893-1234 |
| Cow position: | chr23:25660396-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 12 |
| Conread position: | 893-1261 |
| Cow position: | chr23:24560561-24560195 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 899-1135 |
| Cow position: | chr23:24522402-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 899-1148 |
| Cow position: | chr23:24546912-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 899-1225 |
| Cow position: | chr23:25626781-25627106 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 166, 12 |
| Conread position: | 899-1231 |
| Cow position: | chr23:24626390-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 899-1236 |
| Cow position: | chr23:24535795-24535459 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 899-1243 |
| Cow position: | chr23:25626697-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 283, 8 |
| Conread position: | 899-1250 |
| Cow position: | chr23:24535963-24535613 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 899-1250 |
| Cow position: | chr23:24639298-24639648 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 899-1254 |
| Cow position: | chr23:24639634-24639988 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 899-1254 |
| Cow position: | chr23:24639718-24640072 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 899-1261 |
| Cow position: | chr23:24547080-24546719 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1261 |
| Cow position: | chr23:25660317-25660678 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 284, 9 |
| Conread position: | 899-1262 |
| Cow position: | chr23:25660149-25660511 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 8 |
| Conread position: | 899-1262 |
| Cow position: | chr23:25698490-25698128 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 214, 9 |
| Conread position: | 899-1273 |
| Cow position: | chr23:25626028-25626402 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 899-1307 |
| Cow position: | chr23:24547248-24546839 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr23:25626196-25626603 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 286, 9 |
| Conread position: | 900-1262 |
| Cow position: | chr23:24522569-24522208 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 900-1308 |
| Cow position: | chr23:24547332-24546922 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 362 |
| Conread position: | 901-1191 |
| Cow position: | chr23:24522486-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 901-1257 |
| Cow position: | chr23:24535878-24535522 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 901-1283 |
| Cow position: | chr23:25626532-25626911 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 901-1307 |
| Cow position: | chr23:24522649-24522245 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 901-1308 |
| Cow position: | chr23:24560724-24560314 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 362 |
| Conread position: | 902-1308 |
| Cow position: | chr23:24560891-24560482 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 361 |
| Conread position: | 903-1170 |
| Cow position: | chr23:25723957-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 903-1183 |
| Cow position: | chr23:25698656-25698375 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 903-1231 |
| Cow position: | chr23:24546992-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1231 |
| Cow position: | chr23:24560468-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 8 |
| Conread position: | 903-1231 |
| Cow position: | chr23:25724041-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 282, 5 |
| Conread position: | 903-1243 |
| Cow position: | chr23:25698570-25698231 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 226, 9 |
| Conread position: | 903-1260 |
| Cow position: | chr23:24639554-24639910 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1261 |
| Cow position: | chr23:24626310-24626667 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 10 |
| Conread position: | 903-1280 |
| Cow position: | chr23:25660237-25660612 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 903-1308 |
| Cow position: | chr23:24547160-24546754 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 5 |
| Conread position: | 903-1308 |
| Cow position: | chr23:24560636-24560230 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 9 |
| Conread position: | 903-1308 |
| Cow position: | chr23:24560804-24560398 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 905-1261 |
| Cow position: | chr23:24536042-24535686 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 906-1148 |
| Cow position: | chr23:25698316-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 906-1177 |
| Cow position: | chr23:24626480-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 906-1249 |
| Cow position: | chr23:25626118-25626461 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 911-1226 |
| Cow position: | chr23:25698395-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 912-1231 |
| Cow position: | chr23:24521968-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 194, 240 |
| Conread position: | 912-1243 |
| Cow position: | chr23:24522805-24522481 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 912-1307 |
| Cow position: | chr23:24639226-24639623 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 206 |
| Conread position: | 913-1308 |
| Cow position: | chr23:24639395-24639792 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 113, 121 |
| Conread position: | 914-1283 |
| Cow position: | chr23:25625958-25626326 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 288 |
| Conread position: | 916-1278 |
| Cow position: | chr23:24639482-24639842 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 110, 119 |
| Conread position: | 952-1262 |
| Cow position: | chr23:24626274-24626584 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 963-1257 |
| Cow position: | chr23:25660128-25660422 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 144, 135 |
| Conread position: | 970-1245 |
| Cow position: | chr23:24560906-24560631 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 971-1261 |
| Cow position: | chr23:25724142-25723852 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 987-1307 |
| Cow position: | chr23:24639217-24639539 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 993-1308 |
| Cow position: | chr23:24521971-24521659 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 189, 243 |
| Conread position: | 1002-1231 |
| Cow position: | chr23:25698640-25698411 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 32 |
Show alignments to all cow chromosomes.