Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 316-583 |
| Cow position: | chr24:17062913-17063180 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-591 |
| Cow position: | chr24:17010413-17010687 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-595 |
| Cow position: | chr24:17081833-17081556 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-579 |
| Cow position: | chr24:16984943-16985137 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 893-1150 |
| Cow position: | chr24:17077767-17077510 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 899-1167 |
| Cow position: | chr24:17070792-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1234 |
| Cow position: | chr24:17070708-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 899-1249 |
| Cow position: | chr24:17078264-17077915 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 899-1261 |
| Cow position: | chr24:17035625-17035264 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1304 |
| Cow position: | chr24:17036213-17035807 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 899-1307 |
| Cow position: | chr24:17070540-17070949 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 8 |
| Conread position: | 899-1308 |
| Cow position: | chr24:17035541-17035131 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 13 |
| Conread position: | 899-1308 |
| Cow position: | chr24:17035877-17035467 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr24:17035961-17035551 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr24:17036045-17035635 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 9 |
| Conread position: | 900-1262 |
| Cow position: | chr24:17013162-17013522 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 13 |
| Conread position: | 901-1308 |
| Cow position: | chr24:17036629-17036223 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 77 |
| Conread position: | 902-1128 |
| Cow position: | chr24:16986429-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1245 |
| Cow position: | chr24:17036545-17036204 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1250 |
| Cow position: | chr24:17036125-17035779 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1307 |
| Cow position: | chr24:17035705-17035300 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 5 |
| Conread position: | 903-1308 |
| Cow position: | chr24:17036461-17036055 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 8 |
| Conread position: | 903-1308 |
| Cow position: | chr24:17077924-17077518 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 5 |
| Conread position: | 905-1232 |
| Cow position: | chr24:17035284-17034957 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 905-1234 |
| Cow position: | chr24:17035452-17035123 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 283, 297 |
| Conread position: | 905-1240 |
| Cow position: | chr24:17077839-17077504 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 905-1297 |
| Cow position: | chr24:17036376-17035982 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 381 |
| Conread position: | 905-1308 |
| Cow position: | chr24:17036292-17035887 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 101 |
| Conread position: | 905-1308 |
| Cow position: | chr24:17070629-17071034 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 359 |
| Conread position: | 911-1262 |
| Cow position: | chr24:17070467-17070818 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 911-1308 |
| Cow position: | chr24:17078085-17077686 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 351 |
| Conread position: | 914-1231 |
| Cow position: | chr24:17077998-17077681 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 916-1262 |
| Cow position: | chr24:17070388-17070734 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 917-1173 |
| Cow position: | chr24:17035188-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 918-1308 |
| Cow position: | chr24:17035775-17035383 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 343 |
| Conread position: | 927-1308 |
| Cow position: | chr24:17078153-17077770 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 335 |
| Conread position: | 933-1231 |
| Cow position: | chr24:17035340-17035042 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 964-1212 |
| Cow position: | chr24:16986408-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 222, 18 |
| Conread position: | 971-1308 |
| Cow position: | chr24:17013148-17013487 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 214, 230 |
| Conread position: | 1074-1283 |
| Cow position: | chr24:16986433-16986641 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 200, 0 |
Show alignments to all cow chromosomes.