Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 814-1284 |
| Cow position: | chr28:7758320-7758787 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 72 |
| Conread position: | 891-1308 |
| Cow position: | chr28:7810252-7810662 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 893-1111 |
| Cow position: | chr28:34696324-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 893-1235 |
| Cow position: | chr28:9253263-9253603 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 893-1248 |
| Cow position: | chr28:9299059-9299398 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 225, 11 |
| Conread position: | 893-1254 |
| Cow position: | chr28:7810583-7810942 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 893-1256 |
| Cow position: | chr28:9290080-9290436 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 11 |
| Conread position: | 893-1306 |
| Cow position: | chr28:7757576-7757989 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 11 |
| Conread position: | 895-1173 |
| Cow position: | chr28:34673348-34673625 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 898-1185 |
| Cow position: | chr28:34673603-34673889 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 206, 10 |
| Conread position: | 898-1234 |
| Cow position: | chr28:11333805-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 898-1236 |
| Cow position: | chr28:7757664-7758001 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 10 |
| Conread position: | 899-1149 |
| Cow position: | chr28:7758085-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 203, 9 |
| Conread position: | 899-1158 |
| Cow position: | chr28:9253352-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 254, 9 |
| Conread position: | 899-1180 |
| Cow position: | chr28:9290416-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 899-1248 |
| Cow position: | chr28:9253016-9253364 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 12 |
| Conread position: | 899-1249 |
| Cow position: | chr28:7757917-7758266 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 899-1261 |
| Cow position: | chr28:7757497-7757858 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 12 |
| Conread position: | 899-1261 |
| Cow position: | chr28:9290169-9290524 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 899-1262 |
| Cow position: | chr28:7758489-7758851 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 200, 12 |
| Conread position: | 899-1307 |
| Cow position: | chr28:9253100-9253509 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr28:7757413-7757823 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 365, 10 |
| Conread position: | 899-1308 |
| Cow position: | chr28:9298731-9299138 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 365, 8 |
| Conread position: | 900-1172 |
| Cow position: | chr28:7810672-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 902-1262 |
| Cow position: | chr28:9290334-9290693 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 5, 41 |
| Conread position: | 903-1091 |
| Cow position: | chr28:7810760-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 903-1161 |
| Cow position: | chr28:9299306-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 218, 5 |
| Conread position: | 903-1211 |
| Cow position: | chr28:34695997-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 903-1234 |
| Cow position: | chr28:11334136-11333806 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 5 |
| Conread position: | 903-1250 |
| Cow position: | chr28:34696165-34696511 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 903-1254 |
| Cow position: | chr28:7757837-7758187 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 199, 5 |
| Conread position: | 903-1254 |
| Cow position: | chr28:11333884-11333534 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 275, 5 |
| Conread position: | 903-1273 |
| Cow position: | chr28:11334052-11333682 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 360, 5 |
| Conread position: | 903-1283 |
| Cow position: | chr28:34696081-34696459 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 244, 9 |
| Conread position: | 905-1248 |
| Cow position: | chr28:7757754-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 205, 215 |
| Conread position: | 905-1283 |
| Cow position: | chr28:33210230-33210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 49 |
| Conread position: | 905-1308 |
| Cow position: | chr28:9253189-9253594 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 369 |
| Conread position: | 906-1280 |
| Cow position: | chr28:34679557-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 212, 173 |
| Conread position: | 908-1308 |
| Cow position: | chr28:7757337-7757739 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 213, 191 |
| Conread position: | 911-1236 |
| Cow position: | chr28:9299229-9299554 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 194, 202 |
| Conread position: | 911-1308 |
| Cow position: | chr28:11333961-11333562 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 351 |
| Conread position: | 912-1176 |
| Cow position: | chr28:9298910-9299172 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 112, 84 |
| Conread position: | 915-1261 |
| Cow position: | chr28:34695840-34696186 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 922-1308 |
| Cow position: | chr28:9252954-9253342 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 192, 199 |
| Conread position: | 923-1308 |
| Cow position: | chr28:11334201-11333814 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 937-1261 |
| Cow position: | chr28:34679608-34679283 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 264, 62 |
| Conread position: | 951-1262 |
| Cow position: | chr28:7810555-7810866 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 952-1306 |
| Cow position: | chr28:9290053-9290404 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 163, 153 |
| Conread position: | 981-1261 |
| Cow position: | chr28:9298561-9298839 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 983-1236 |
| Cow position: | chr28:9299217-9299470 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 120, 137 |
| Conread position: | 983-1249 |
| Cow position: | chr28:33210223-33210490 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 136 |
| Conread position: | 986-1308 |
| Cow position: | chr28:7758323-7758647 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 129, 134 |
Show alignments to all cow chromosomes.