Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 324-581 |
| Cow position: | chr8:55569522-55569779 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 179, 174 |
| Conread position: | 893-1234 |
| Cow position: | chr8:48406882-48406543 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 12 |
| Conread position: | 893-1249 |
| Cow position: | chr8:46816289-46816643 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 11 |
| Conread position: | 893-1257 |
| Cow position: | chr8:45201514-45201876 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 12 |
| Conread position: | 896-1236 |
| Cow position: | chr8:46815956-46816294 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 290, 9 |
| Conread position: | 899-1103 |
| Cow position: | chr8:45201771-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1234 |
| Cow position: | chr8:46816042-46816376 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 205, 10 |
| Conread position: | 899-1234 |
| Cow position: | chr8:46816210-46816544 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 296, 9 |
| Conread position: | 899-1243 |
| Cow position: | chr8:46816714-46817057 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 899-1243 |
| Cow position: | chr8:55580987-55581330 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 899-1249 |
| Cow position: | chr8:45201183-45201532 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 211, 9 |
| Conread position: | 899-1254 |
| Cow position: | chr8:45201099-45201453 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 899-1254 |
| Cow position: | chr8:55581239-55581593 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1261 |
| Cow position: | chr8:46816798-46817159 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 899-1262 |
| Cow position: | chr8:46816462-46816824 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 219, 9 |
| Conread position: | 899-1262 |
| Cow position: | chr8:46816630-46816992 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 219, 12 |
| Conread position: | 899-1280 |
| Cow position: | chr8:48407549-48407170 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 9 |
| Conread position: | 899-1305 |
| Cow position: | chr8:46816546-46816953 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 8 |
| Conread position: | 899-1307 |
| Cow position: | chr8:48407381-48406972 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 8 |
| Conread position: | 899-1308 |
| Cow position: | chr8:6957999-6957592 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 337, 13 |
| Conread position: | 903-1236 |
| Cow position: | chr8:48407293-48406961 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 5 |
| Conread position: | 903-1250 |
| Cow position: | chr8:46816886-46817232 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 903-1254 |
| Cow position: | chr8:45201439-45201788 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 8 |
| Conread position: | 903-1307 |
| Cow position: | chr8:55580907-55581312 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 5 |
| Conread position: | 903-1308 |
| Cow position: | chr8:45201019-45201425 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 5 |
| Conread position: | 903-1308 |
| Cow position: | chr8:48407209-48406803 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 5 |
| Conread position: | 905-1234 |
| Cow position: | chr8:55581160-55581489 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 298 |
| Conread position: | 905-1236 |
| Cow position: | chr8:48406620-48406289 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 292, 304 |
| Conread position: | 905-1261 |
| Cow position: | chr8:46816131-46816487 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 197 |
| Conread position: | 905-1262 |
| Cow position: | chr8:48407124-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 295 |
| Conread position: | 905-1263 |
| Cow position: | chr8:45201608-45201966 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 341 |
| Conread position: | 905-1272 |
| Cow position: | chr8:48406956-48406588 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 195, 217 |
| Conread position: | 905-1279 |
| Cow position: | chr8:46816971-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 215 |
| Conread position: | 905-1308 |
| Cow position: | chr8:45201356-45201761 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 215 |
| Conread position: | 905-1308 |
| Cow position: | chr8:55581076-55581481 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 905-1308 |
| Cow position: | chr8:55581328-55581733 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 906-1261 |
| Cow position: | chr8:45201273-45201628 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 295 |
| Conread position: | 906-1261 |
| Cow position: | chr8:46816384-46816739 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 130 |
| Conread position: | 911-1254 |
| Cow position: | chr8:46815882-46816228 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 83, 296 |
| Conread position: | 911-1254 |
| Cow position: | chr8:55580746-55581089 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 79, 89 |
| Conread position: | 912-1283 |
| Cow position: | chr8:48406697-48406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 913-1308 |
| Cow position: | chr8:48407620-48407223 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 914-1250 |
| Cow position: | chr8:55580833-55581169 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 918-1308 |
| Cow position: | chr8:45200949-45201341 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 924-1150 |
| Cow position: | chr8:6958059-6957833 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 966-1262 |
| Cow position: | chr8:45200913-45201209 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 967-1308 |
| Cow position: | chr8:48406725-48406383 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 317, 12 |
| Conread position: | 971-1264 |
| Cow position: | chr8:55581478-55581772 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 224, 232 |
| Conread position: | 971-1307 |
| Cow position: | chr8:48407646-48407308 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 290 |
| Conread position: | 1008-1256 |
| Cow position: | chr8:6958059-6957811 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 180, 197 |
Show alignments to all cow chromosomes.