Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 868-1249 |
| Cow position: | chrX:25325619-25325241 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 11 |
| Conread position: | 893-1183 |
| Cow position: | chrX:12627431-12627717 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 166, 11 |
| Conread position: | 893-1254 |
| Cow position: | chrX:25310050-25310409 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 11 |
| Conread position: | 893-1260 |
| Cow position: | chrX:25309798-25310163 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 11 |
| Conread position: | 898-1261 |
| Cow position: | chrX:25310138-25310500 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 10 |
| Conread position: | 899-1243 |
| Cow position: | chrX:25324666-25324323 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 213, 13 |
| Conread position: | 899-1245 |
| Cow position: | chrX:25325002-25324657 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 899-1245 |
| Cow position: | chrX:25325338-25324993 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 899-1254 |
| Cow position: | chrX:25325758-25325404 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 899-1261 |
| Cow position: | chrX:25324834-25324473 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 8 |
| Conread position: | 899-1262 |
| Cow position: | chrX:25309887-25310249 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 899-1262 |
| Cow position: | chrX:25309971-25310333 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 899-1306 |
| Cow position: | chrX:29045095-29044687 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 899-1308 |
| Cow position: | chrX:25325674-25325264 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 900-1180 |
| Cow position: | chrX:25324497-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 902-1308 |
| Cow position: | chrX:29045262-29044853 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 220 |
| Conread position: | 903-1245 |
| Cow position: | chrX:29045742-29045403 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 212, 5 |
| Conread position: | 903-1246 |
| Cow position: | chrX:25310227-25310569 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 903-1261 |
| Cow position: | chrX:25325502-25325145 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 5 |
| Conread position: | 904-1250 |
| Cow position: | chrX:13826862-13826517 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 905-1171 |
| Cow position: | chrX:25310312-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 122, 137 |
| Conread position: | 905-1243 |
| Cow position: | chrX:25325417-25325079 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 209, 225 |
| Conread position: | 905-1250 |
| Cow position: | chrX:25325081-25324736 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 208, 216 |
| Conread position: | 905-1254 |
| Cow position: | chrX:25324745-25324396 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 280, 299 |
| Conread position: | 905-1254 |
| Cow position: | chrX:25325249-25324900 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 294, 299 |
| Conread position: | 905-1256 |
| Cow position: | chrX:29045006-29044655 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 905-1262 |
| Cow position: | chrX:25309724-25310081 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 216 |
| Conread position: | 905-1270 |
| Cow position: | chrX:25325165-25324799 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 280, 299 |
| Conread position: | 911-1262 |
| Cow position: | chrX:25325831-25325480 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 203, 210 |
| Conread position: | 911-1262 |
| Cow position: | chrX:29045168-29044817 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 925-1221 |
| Cow position: | chrX:14181284-14180988 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 929-1308 |
| Cow position: | chrX:29045318-29044937 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 965-1308 |
| Cow position: | chrX:25309700-25310045 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 972-1200 |
| Cow position: | chrX:12627842-12628071 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 78 |
| Conread position: | 972-1254 |
| Cow position: | chrX:29045356-29045077 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 972-1281 |
| Cow position: | chrX:29045758-29045449 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 141, 148 |
| Conread position: | 976-1262 |
| Cow position: | chrX:29045838-29045552 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 1045-1262 |
| Cow position: | chrX:25309696-25309913 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 76, 60 |
Show alignments to all cow chromosomes.