Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 5-312 |
| Cow position: | chr1:39716007-39715709 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 305-552 |
| Cow position: | chr1:39715422-39715176 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 343-561 |
| Cow position: | chr1:5577473-5577249 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 348-561 |
| Cow position: | chr1:46228737-46228513 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 349-574 |
| Cow position: | chr1:779695-779923 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 361-570 |
| Cow position: | chr1:20838768-20838979 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 362-582 |
| Cow position: | chr1:25014676-25014899 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 364-562 |
| Cow position: | chr1:18484401-18484192 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 365-626 |
| Cow position: | chr1:70035257-70035522 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 366-552 |
| Cow position: | chr1:5266025-5265833 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 367-497 |
| Cow position: | chr1:11469332-11469467 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 367-561 |
| Cow position: | chr1:45858824-45859019 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 368-494 |
| Cow position: | chr1:50272514-50272377 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 369-564 |
| Cow position: | chr1:31274245-31274041 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 371-555 |
| Cow position: | chr1:83039231-83039415 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 372-496 |
| Cow position: | chr1:32607761-32607893 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 372-501 |
| Cow position: | chr1:101927337-101927469 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 372-521 |
| Cow position: | chr1:81370670-81370826 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 372-547 |
| Cow position: | chr1:14648675-14648497 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 372-549 |
| Cow position: | chr1:37432373-37432562 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 372-551 |
| Cow position: | chr1:33538369-33538556 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 372-552 |
| Cow position: | chr1:52085393-52085213 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 115 |
| Conread position: | 372-552 |
| Cow position: | chr1:64973954-64974140 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 165 |
| Conread position: | 372-552 |
| Cow position: | chr1:92661679-92661495 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 372-558 |
| Cow position: | chr1:67519958-67519761 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 125 |
| Conread position: | 372-561 |
| Cow position: | chr1:43218253-43218446 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 128 |
| Conread position: | 372-561 |
| Cow position: | chr1:85867172-85867368 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-563 |
| Cow position: | chr1:53703685-53703489 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 372-564 |
| Cow position: | chr1:5215413-5215218 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 372-564 |
| Cow position: | chr1:12884518-12884319 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 372-564 |
| Cow position: | chr1:15366888-15366686 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-564 |
| Cow position: | chr1:22440339-22440539 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 372-564 |
| Cow position: | chr1:22774273-22774078 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 372-564 |
| Cow position: | chr1:39627941-39627737 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 372-564 |
| Cow position: | chr1:84778227-84778424 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 372-564 |
| Cow position: | chr1:97538089-97538297 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-568 |
| Cow position: | chr1:79466033-79466234 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 372-577 |
| Cow position: | chr1:71146884-71146668 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 372-618 |
| Cow position: | chr1:39559985-39559739 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 372-621 |
| Cow position: | chr1:53755080-53755328 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 373-544 |
| Cow position: | chr1:4278901-4279074 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 373-552 |
| Cow position: | chr1:77388051-77387867 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 373-556 |
| Cow position: | chr1:68809497-68809313 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 373-566 |
| Cow position: | chr1:6322290-6322487 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 374-539 |
| Cow position: | chr1:10684640-10684813 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 374-546 |
| Cow position: | chr1:1743222-1743041 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 374-564 |
| Cow position: | chr1:71453737-71453544 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 163 |
| Conread position: | 375-564 |
| Cow position: | chr1:58194810-58194617 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 376-532 |
| Cow position: | chr1:13132752-13132591 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 376-552 |
| Cow position: | chr1:6717348-6717162 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 376-564 |
| Cow position: | chr1:57742935-57742746 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 379-551 |
| Cow position: | chr1:91040359-91040529 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 134 |
| Conread position: | 380-562 |
| Cow position: | chr1:91043341-91043533 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 381-548 |
| Cow position: | chr1:79915595-79915773 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 381-564 |
| Cow position: | chr1:42505314-42505128 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 381-564 |
| Cow position: | chr1:53648335-53648524 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 382-551 |
| Cow position: | chr1:24222358-24222531 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 382-552 |
| Cow position: | chr1:13245694-13245520 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 382-561 |
| Cow position: | chr1:41732008-41731822 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 383-565 |
| Cow position: | chr1:62301588-62301397 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 398-568 |
| Cow position: | chr1:40314982-40314809 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 399-552 |
| Cow position: | chr1:26411419-26411264 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 47 |
Show alignments to all cow chromosomes.