Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 326-564 |
| Cow position: | chr10:57503712-57503958 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 358-563 |
| Cow position: | chr10:39645846-39646051 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 364-550 |
| Cow position: | chr10:40158820-40159010 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 102, 74 |
| Conread position: | 367-537 |
| Cow position: | chr10:28193822-28193648 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 367-561 |
| Cow position: | chr10:52132280-52132487 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 369-563 |
| Cow position: | chr10:48568838-48568632 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 369-564 |
| Cow position: | chr10:50964082-50964283 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 369-582 |
| Cow position: | chr10:30249917-30250136 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 369-605 |
| Cow position: | chr10:32532378-32532628 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 371-487 |
| Cow position: | chr10:27132657-27132535 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 371-551 |
| Cow position: | chr10:50162873-50163065 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 371-552 |
| Cow position: | chr10:49144297-49144481 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 372-533 |
| Cow position: | chr10:4720969-4721145 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 372-533 |
| Cow position: | chr10:31385654-31385820 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-539 |
| Cow position: | chr10:33073809-33073630 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 372-541 |
| Cow position: | chr10:44830487-44830315 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-548 |
| Cow position: | chr10:2419585-2419412 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 372-550 |
| Cow position: | chr10:36425050-36424867 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 372-550 |
| Cow position: | chr10:57773740-57773926 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 372-552 |
| Cow position: | chr10:881851-882031 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 372-552 |
| Cow position: | chr10:29822419-29822610 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 372-552 |
| Cow position: | chr10:39244876-39244690 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 372-561 |
| Cow position: | chr10:5070610-5070803 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 372-561 |
| Cow position: | chr10:7506947-7506749 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-561 |
| Cow position: | chr10:46451689-46451490 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-561 |
| Cow position: | chr10:58492235-58492044 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 372-562 |
| Cow position: | chr10:5505800-5505606 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 372-563 |
| Cow position: | chr10:8861169-8861372 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 372-563 |
| Cow position: | chr10:41085300-41085493 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 372-564 |
| Cow position: | chr10:15603776-15603579 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 177 |
| Conread position: | 372-564 |
| Cow position: | chr10:26014182-26013991 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 372-564 |
| Cow position: | chr10:29291254-29291452 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-564 |
| Cow position: | chr10:53443078-53443277 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 372-564 |
| Cow position: | chr10:57993863-57993662 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 172 |
| Conread position: | 372-565 |
| Cow position: | chr10:49680238-49680440 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 372-570 |
| Cow position: | chr10:60242856-60243054 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 372-595 |
| Cow position: | chr10:32896997-32897236 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 372-627 |
| Cow position: | chr10:68794172-68794438 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 195 |
| Conread position: | 372-651 |
| Cow position: | chr10:47424561-47424279 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 373-564 |
| Cow position: | chr10:5744931-5744740 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 373-570 |
| Cow position: | chr10:64163101-64163309 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 373-579 |
| Cow position: | chr10:37309887-37309665 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 216 |
| Conread position: | 374-561 |
| Cow position: | chr10:23873346-23873156 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 374-561 |
| Cow position: | chr10:54824934-54824738 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 374-562 |
| Cow position: | chr10:12936922-12937118 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 376-554 |
| Cow position: | chr10:1004707-1004894 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 376-561 |
| Cow position: | chr10:28103766-28103576 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 376-562 |
| Cow position: | chr10:28527075-28526880 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 376-568 |
| Cow position: | chr10:53972707-53972506 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 377-564 |
| Cow position: | chr10:64219664-64219478 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 378-542 |
| Cow position: | chr10:16489321-16489142 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 378-564 |
| Cow position: | chr10:26673328-26673530 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 161 |
| Conread position: | 379-539 |
| Cow position: | chr10:24586064-24585894 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 379-552 |
| Cow position: | chr10:41537028-41536854 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 132 |
| Conread position: | 380-564 |
| Cow position: | chr10:48479367-48479179 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 380-568 |
| Cow position: | chr10:19540678-19540478 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 386-551 |
| Cow position: | chr10:42478572-42478409 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 387-564 |
| Cow position: | chr10:48330936-48330757 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 400-552 |
| Cow position: | chr10:43284688-43284534 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 419-556 |
| Cow position: | chr10:1769194-1769050 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.