Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 345-564 |
| Cow position: | chr11:21886520-21886300 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 345-578 |
| Cow position: | chr11:81278661-81278898 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 171 |
| Conread position: | 348-561 |
| Cow position: | chr11:29014423-29014636 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 361-559 |
| Cow position: | chr11:48483945-48483738 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 364-564 |
| Cow position: | chr11:24314552-24314758 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 122 |
| Conread position: | 369-561 |
| Cow position: | chr11:45650967-45650775 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 369-564 |
| Cow position: | chr11:11997465-11997655 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 372-520 |
| Cow position: | chr11:40050095-40049939 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-540 |
| Cow position: | chr11:53270476-53270304 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 372-544 |
| Cow position: | chr11:9063181-9063001 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 168 |
| Conread position: | 372-552 |
| Cow position: | chr11:27666130-27665938 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-552 |
| Cow position: | chr11:55354331-55354150 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 372-555 |
| Cow position: | chr11:21922499-21922689 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 372-561 |
| Cow position: | chr11:8019995-8020191 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 372-561 |
| Cow position: | chr11:32734375-32734567 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 372-561 |
| Cow position: | chr11:80003084-80003280 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 178 |
| Conread position: | 372-561 |
| Cow position: | chr11:86925282-86925090 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 372-562 |
| Cow position: | chr11:50134122-50133927 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 372-564 |
| Cow position: | chr11:6200049-6199854 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 132 |
| Conread position: | 372-564 |
| Cow position: | chr11:12112338-12112532 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 372-564 |
| Cow position: | chr11:13828816-13828625 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 372-564 |
| Cow position: | chr11:25379501-25379302 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 372-564 |
| Cow position: | chr11:26586009-26586214 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 201 |
| Conread position: | 372-564 |
| Cow position: | chr11:35506893-35507083 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 372-564 |
| Cow position: | chr11:40144788-40144599 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 372-564 |
| Cow position: | chr11:54668862-54669059 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 372-564 |
| Cow position: | chr11:61754232-61754419 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 372-564 |
| Cow position: | chr11:74216176-74215978 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 372-564 |
| Cow position: | chr11:84829721-84829525 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 372-565 |
| Cow position: | chr11:21849964-21849769 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 372-578 |
| Cow position: | chr11:43839536-43839736 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 120 |
| Conread position: | 372-614 |
| Cow position: | chr11:42682627-42682378 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 170 |
| Conread position: | 373-518 |
| Cow position: | chr11:55115623-55115470 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 373-564 |
| Cow position: | chr11:7443359-7443163 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 374-529 |
| Cow position: | chr11:30775865-30775695 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 374-540 |
| Cow position: | chr11:45554570-45554403 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 375-532 |
| Cow position: | chr11:49216818-49216982 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 376-564 |
| Cow position: | chr11:12998902-12999103 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 376-564 |
| Cow position: | chr11:26713212-26713016 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 376-564 |
| Cow position: | chr11:61205235-61205427 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 377-562 |
| Cow position: | chr11:32317305-32317109 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 378-564 |
| Cow position: | chr11:18370964-18371155 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 379-531 |
| Cow position: | chr11:21525499-21525654 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 379-564 |
| Cow position: | chr11:40016840-40017028 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 161 |
| Conread position: | 381-564 |
| Cow position: | chr11:15361204-15361383 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 382-551 |
| Cow position: | chr11:51268875-51269042 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 382-552 |
| Cow position: | chr11:28748166-28747986 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 384-550 |
| Cow position: | chr11:31126297-31126471 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 396-578 |
| Cow position: | chr11:16653335-16653152 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 415-564 |
| Cow position: | chr11:80589581-80589428 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 418-564 |
| Cow position: | chr11:30789486-30789337 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 28 |
Show alignments to all cow chromosomes.