Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 318-563 |
| Cow position: | chr16:28466942-28466688 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 318-564 |
| Cow position: | chr16:17003750-17004004 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 351-564 |
| Cow position: | chr16:19665633-19665426 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 353-552 |
| Cow position: | chr16:27579478-27579278 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 358-561 |
| Cow position: | chr16:5594259-5594471 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 361-564 |
| Cow position: | chr16:10686666-10686477 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 367-550 |
| Cow position: | chr16:47341438-47341248 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 368-552 |
| Cow position: | chr16:28767550-28767734 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 370-575 |
| Cow position: | chr16:16163346-16163137 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 371-489 |
| Cow position: | chr16:52177315-52177436 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 372-517 |
| Cow position: | chr16:52529418-52529569 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 372-537 |
| Cow position: | chr16:1084375-1084213 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 372-544 |
| Cow position: | chr16:47559128-47559304 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-551 |
| Cow position: | chr16:44667053-44666874 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 372-552 |
| Cow position: | chr16:14325368-14325561 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-552 |
| Cow position: | chr16:27339726-27339914 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 372-552 |
| Cow position: | chr16:42708364-42708170 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 372-552 |
| Cow position: | chr16:46524135-46523947 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 372-552 |
| Cow position: | chr16:48283397-48283580 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 372-561 |
| Cow position: | chr16:9987910-9987715 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 42, 179 |
| Conread position: | 372-561 |
| Cow position: | chr16:24875035-24874848 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 372-561 |
| Cow position: | chr16:25937907-25938102 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 372-564 |
| Cow position: | chr16:5911320-5911521 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 169 |
| Conread position: | 373-564 |
| Cow position: | chr16:38883544-38883740 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 374-566 |
| Cow position: | chr16:13831549-13831344 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 376-532 |
| Cow position: | chr16:14364828-14364665 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 376-532 |
| Cow position: | chr16:15093192-15093030 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 376-564 |
| Cow position: | chr16:11641478-11641672 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 376-564 |
| Cow position: | chr16:27075549-27075744 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 376-564 |
| Cow position: | chr16:38178809-38179009 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 376-564 |
| Cow position: | chr16:52731511-52731700 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 376-567 |
| Cow position: | chr16:19342923-19342725 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 379-552 |
| Cow position: | chr16:21168264-21168437 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 380-535 |
| Cow position: | chr16:45684696-45684861 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 381-560 |
| Cow position: | chr16:11752047-11752241 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 382-561 |
| Cow position: | chr16:12450869-12450688 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 161 |
| Conread position: | 389-564 |
| Cow position: | chr16:46450795-46450975 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 32 |
Show alignments to all cow chromosomes.