Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 298-573 |
| Cow position: | chr3:36729634-36729918 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 141 |
| Conread position: | 349-575 |
| Cow position: | chr3:79916116-79915895 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 357-561 |
| Cow position: | chr3:84881412-84881202 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 362-564 |
| Cow position: | chr3:54909561-54909757 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 367-552 |
| Cow position: | chr3:1750479-1750674 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 367-562 |
| Cow position: | chr3:40231947-40232146 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 147 |
| Conread position: | 372-458 |
| Cow position: | chr3:14600308-14600396 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-495 |
| Cow position: | chr3:49841166-49841032 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 372-518 |
| Cow position: | chr3:47117188-47117341 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 372-522 |
| Cow position: | chr3:56565487-56565645 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 372-533 |
| Cow position: | chr3:62561011-62561182 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-539 |
| Cow position: | chr3:61244027-61244204 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 44, 170 |
| Conread position: | 372-541 |
| Cow position: | chr3:40736583-40736409 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 372-546 |
| Cow position: | chr3:34953696-34953874 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 372-549 |
| Cow position: | chr3:37073404-37073208 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 372-550 |
| Cow position: | chr3:41402388-41402577 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 372-552 |
| Cow position: | chr3:16169980-16169795 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 372-552 |
| Cow position: | chr3:30830598-30830776 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 372-552 |
| Cow position: | chr3:38690968-38690782 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 372-556 |
| Cow position: | chr3:7942157-7941972 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 372-561 |
| Cow position: | chr3:15329384-15329187 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 132 |
| Conread position: | 372-563 |
| Cow position: | chr3:31812704-31812905 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 372-563 |
| Cow position: | chr3:45343364-45343567 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-564 |
| Cow position: | chr3:3095767-3095583 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 372-564 |
| Cow position: | chr3:17681531-17681717 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 372-564 |
| Cow position: | chr3:19559896-19559697 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 150 |
| Conread position: | 372-564 |
| Cow position: | chr3:40000976-40000783 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 372-564 |
| Cow position: | chr3:54051531-54051339 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 372-564 |
| Cow position: | chr3:75163174-75162983 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 372-564 |
| Cow position: | chr3:79138953-79138759 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 372-565 |
| Cow position: | chr3:45435201-45435400 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 146 |
| Conread position: | 372-588 |
| Cow position: | chr3:24783751-24783978 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 373-552 |
| Cow position: | chr3:1670562-1670380 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 373-562 |
| Cow position: | chr3:33468438-33468241 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 374-541 |
| Cow position: | chr3:18579286-18579460 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 374-556 |
| Cow position: | chr3:73827115-73827303 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 374-561 |
| Cow position: | chr3:48858108-48858303 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 374-564 |
| Cow position: | chr3:37808059-37807869 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 374-564 |
| Cow position: | chr3:64435785-64435589 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 174 |
| Conread position: | 374-579 |
| Cow position: | chr3:13478565-13478771 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 376-552 |
| Cow position: | chr3:54554484-54554655 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 376-553 |
| Cow position: | chr3:66945083-66944895 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 376-564 |
| Cow position: | chr3:41946844-41946650 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 379-564 |
| Cow position: | chr3:77065450-77065262 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 379-564 |
| Cow position: | chr3:77067373-77067185 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 383-561 |
| Cow position: | chr3:8852501-8852686 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 388-564 |
| Cow position: | chr3:49784859-49785037 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 157 |
| Conread position: | 394-549 |
| Cow position: | chr3:16308762-16308923 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 417-552 |
| Cow position: | chr3:2628449-2628587 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 81 |
Show alignments to all cow chromosomes.