Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 369-564 |
| Cow position: | chr4:11653017-11653223 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 369-564 |
| Cow position: | chr4:21415119-21414919 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 371-564 |
| Cow position: | chr4:65208031-65207838 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 371-566 |
| Cow position: | chr4:38623665-38623458 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 372-531 |
| Cow position: | chr4:6381241-6381073 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-539 |
| Cow position: | chr4:12681678-12681848 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 372-551 |
| Cow position: | chr4:13920054-13919868 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 372-552 |
| Cow position: | chr4:20291056-20291242 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 372-559 |
| Cow position: | chr4:62674325-62674514 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 372-561 |
| Cow position: | chr4:25575969-25576172 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-561 |
| Cow position: | chr4:66127292-66127104 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 98, 57 |
| Conread position: | 372-563 |
| Cow position: | chr4:5499268-5499476 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-564 |
| Cow position: | chr4:10871364-10871167 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 372-564 |
| Cow position: | chr4:20464939-20465139 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-564 |
| Cow position: | chr4:22567916-22568112 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 372-564 |
| Cow position: | chr4:23926717-23926528 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 50 |
| Conread position: | 372-564 |
| Cow position: | chr4:34502401-34502210 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 372-564 |
| Cow position: | chr4:37835898-37835711 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 372-564 |
| Cow position: | chr4:44735101-44734914 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 372-564 |
| Cow position: | chr4:47235661-47235862 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 372-564 |
| Cow position: | chr4:48404202-48403998 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 372-571 |
| Cow position: | chr4:51289771-51289973 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 372-575 |
| Cow position: | chr4:43395833-43396044 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 372-600 |
| Cow position: | chr4:52706842-52707073 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 373-535 |
| Cow position: | chr4:30223249-30223076 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 373-552 |
| Cow position: | chr4:47476765-47476949 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 373-552 |
| Cow position: | chr4:56793850-56793665 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 374-532 |
| Cow position: | chr4:12740802-12740964 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 374-533 |
| Cow position: | chr4:3245031-3245196 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 374-541 |
| Cow position: | chr4:14798714-14798884 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 375-557 |
| Cow position: | chr4:24370400-24370209 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 375-561 |
| Cow position: | chr4:52579943-52580136 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 130 |
| Conread position: | 376-561 |
| Cow position: | chr4:33294958-33294771 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 376-564 |
| Cow position: | chr4:13772448-13772259 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 376-564 |
| Cow position: | chr4:39011289-39011105 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 376-564 |
| Cow position: | chr4:65478956-65478768 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 376-565 |
| Cow position: | chr4:43848177-43847996 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 377-562 |
| Cow position: | chr4:37729989-37729798 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 379-561 |
| Cow position: | chr4:1986967-1987156 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 382-554 |
| Cow position: | chr4:47409187-47409367 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 382-562 |
| Cow position: | chr4:42495618-42495432 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 382-570 |
| Cow position: | chr4:44635571-44635761 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 383-569 |
| Cow position: | chr4:64697208-64697015 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 385-580 |
| Cow position: | chr4:51619485-51619283 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 386-552 |
| Cow position: | chr4:61234700-61234530 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 391-564 |
| Cow position: | chr4:19127773-19127955 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 401-560 |
| Cow position: | chr4:8615389-8615218 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 141 |
Show alignments to all cow chromosomes.