Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 337-564 |
| Cow position: | chr5:35990406-35990168 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 341-564 |
| Cow position: | chr5:51071371-51071596 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 120 |
| Conread position: | 366-552 |
| Cow position: | chr5:18883004-18882818 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 367-564 |
| Cow position: | chr5:50227516-50227725 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 47, 182 |
| Conread position: | 368-512 |
| Cow position: | chr5:23414170-23414025 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 372-535 |
| Cow position: | chr5:49635195-49635023 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-551 |
| Cow position: | chr5:7780490-7780670 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 372-552 |
| Cow position: | chr5:4989680-4989867 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-552 |
| Cow position: | chr5:9675495-9675303 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-552 |
| Cow position: | chr5:51761098-51760917 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 372-552 |
| Cow position: | chr5:57147700-57147892 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-559 |
| Cow position: | chr5:52816449-52816254 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 372-560 |
| Cow position: | chr5:33471159-33470969 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 372-561 |
| Cow position: | chr5:30335986-30335792 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 372-561 |
| Cow position: | chr5:55985425-55985229 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-562 |
| Cow position: | chr5:55195519-55195709 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 372-564 |
| Cow position: | chr5:11955406-11955212 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 372-564 |
| Cow position: | chr5:13940958-13940757 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 180 |
| Conread position: | 372-564 |
| Cow position: | chr5:14215863-14215664 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 138 |
| Conread position: | 372-564 |
| Cow position: | chr5:29337102-29336898 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-564 |
| Cow position: | chr5:57291032-57290835 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 372-567 |
| Cow position: | chr5:57783871-57784079 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-575 |
| Cow position: | chr5:33283362-33283149 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 372-579 |
| Cow position: | chr5:34470974-34470764 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 372-579 |
| Cow position: | chr5:50770256-50770046 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 372-600 |
| Cow position: | chr5:65053739-65053973 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 373-522 |
| Cow position: | chr5:18582900-18583057 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 373-552 |
| Cow position: | chr5:14136478-14136290 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 373-562 |
| Cow position: | chr5:38970785-38970977 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 373-564 |
| Cow position: | chr5:44660089-44659900 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 374-521 |
| Cow position: | chr5:18002165-18002016 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 374-564 |
| Cow position: | chr5:70768643-70768844 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 374-568 |
| Cow position: | chr5:5194478-5194678 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 374-623 |
| Cow position: | chr5:8232409-8232158 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 376-560 |
| Cow position: | chr5:4329345-4329534 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 377-564 |
| Cow position: | chr5:11975025-11974830 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 154 |
| Conread position: | 379-550 |
| Cow position: | chr5:6567993-6568167 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 379-573 |
| Cow position: | chr5:40888733-40888535 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 383-550 |
| Cow position: | chr5:56097016-56096839 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 386-521 |
| Cow position: | chr5:21517040-21516899 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 398-575 |
| Cow position: | chr5:61876143-61875959 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 399-552 |
| Cow position: | chr5:15806737-15806893 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 413-552 |
| Cow position: | chr5:41144847-41144992 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.