Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 337-564 |
| Cow position: | chr6:493479-493711 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 347-568 |
| Cow position: | chr6:62789399-62789632 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 348-552 |
| Cow position: | chr6:55450680-55450475 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 361-564 |
| Cow position: | chr6:14098334-14098535 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 367-533 |
| Cow position: | chr6:2819726-2819547 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 367-577 |
| Cow position: | chr6:32071371-32071167 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 170, 55 |
| Conread position: | 369-564 |
| Cow position: | chr6:20406972-20407181 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 369-565 |
| Cow position: | chr6:22804284-22804081 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 371-529 |
| Cow position: | chr6:1562221-1562388 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 371-552 |
| Cow position: | chr6:7951812-7951643 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 371-577 |
| Cow position: | chr6:33546410-33546629 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 372-532 |
| Cow position: | chr6:8543537-8543694 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 372-532 |
| Cow position: | chr6:59276782-59276612 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-533 |
| Cow position: | chr6:2088670-2088846 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-541 |
| Cow position: | chr6:17799038-17798863 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 372-552 |
| Cow position: | chr6:4728826-4728641 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 372-561 |
| Cow position: | chr6:3434491-3434683 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 372-563 |
| Cow position: | chr6:30892545-30892347 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 134 |
| Conread position: | 372-564 |
| Cow position: | chr6:5516925-5516725 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-564 |
| Cow position: | chr6:14937726-14937526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 372-564 |
| Cow position: | chr6:18868484-18868285 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 372-564 |
| Cow position: | chr6:36918096-36917897 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 372-564 |
| Cow position: | chr6:46627412-46627610 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 372-564 |
| Cow position: | chr6:55326439-55326246 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 372-567 |
| Cow position: | chr6:54565027-54565223 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 372-573 |
| Cow position: | chr6:35406926-35406718 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 372-577 |
| Cow position: | chr6:51111318-51111526 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 374-552 |
| Cow position: | chr6:66320577-66320763 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 374-583 |
| Cow position: | chr6:49821639-49821858 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 204 |
| Conread position: | 376-551 |
| Cow position: | chr6:12510659-12510476 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 376-551 |
| Cow position: | chr6:31207171-31206991 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 376-554 |
| Cow position: | chr6:27222282-27222470 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 376-561 |
| Cow position: | chr6:59068540-59068346 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 377-551 |
| Cow position: | chr6:42574708-42574881 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 379-540 |
| Cow position: | chr6:15749488-15749322 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 379-555 |
| Cow position: | chr6:8565299-8565482 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 381-564 |
| Cow position: | chr6:40157063-40156874 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 382-552 |
| Cow position: | chr6:52121774-52121947 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 383-614 |
| Cow position: | chr6:37854472-37854716 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 31, 124 |
| Conread position: | 384-548 |
| Cow position: | chr6:37519149-37519321 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 385-561 |
| Cow position: | chr6:22590163-22590343 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 387-564 |
| Cow position: | chr6:54634241-54634059 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 420-559 |
| Cow position: | chr6:47847248-47847107 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 51, 20 |
Show alignments to all cow chromosomes.