Cow genome map
| Conread name: | Ss1.1-rspl24_j4.5 |
| Conread position: | 359-561 |
| Cow position: | chrX:4629606-4629397 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 371-563 |
| Cow position: | chrX:19093953-19093755 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 372-552 |
| Cow position: | chrX:6570198-6570375 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 372-552 |
| Cow position: | chrX:35695348-35695536 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 176 |
| Conread position: | 372-552 |
| Cow position: | chrX:36044323-36044141 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 372-552 |
| Cow position: | chrX:37139698-37139886 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 372-558 |
| Cow position: | chrX:40142137-40141945 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 372-562 |
| Cow position: | chrX:17200799-17200996 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 170 |
| Conread position: | 372-563 |
| Cow position: | chrX:42218950-42219147 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 372-564 |
| Cow position: | chrX:4425059-4425260 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 372-564 |
| Cow position: | chrX:8827446-8827248 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 372-564 |
| Cow position: | chrX:20734564-20734763 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 372-565 |
| Cow position: | chrX:263729-263527 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 372-565 |
| Cow position: | chrX:5648069-5647871 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 372-572 |
| Cow position: | chrX:4794100-4793893 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 173 |
| Conread position: | 372-572 |
| Cow position: | chrX:32049368-32049576 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 372-576 |
| Cow position: | chrX:15844141-15843927 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 208 |
| Conread position: | 372-601 |
| Cow position: | chrX:21989911-21990138 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 372-615 |
| Cow position: | chrX:16341217-16341453 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 373-561 |
| Cow position: | chrX:10462717-10462913 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 373-564 |
| Cow position: | chrX:30085105-30084907 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 374-565 |
| Cow position: | chrX:27024237-27024424 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 374-569 |
| Cow position: | chrX:25849010-25849210 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 374-618 |
| Cow position: | chrX:20715833-20715584 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 376-552 |
| Cow position: | chrX:25707738-25707560 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 376-561 |
| Cow position: | chrX:17265006-17264818 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 376-576 |
| Cow position: | chrX:17516617-17516820 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 379-564 |
| Cow position: | chrX:19976908-19976711 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 385-551 |
| Cow position: | chrX:35382814-35382647 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 388-575 |
| Cow position: | chrX:40342634-40342829 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 120 |
Show alignments to all cow chromosomes.