Cow genome map

Conread name: Ss1.1-rspl24_p14.5

Conread position: 1-345
Cow position: chr17:44468030-44468374 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 217
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 147, 126

Conread position: 1-477
Cow position: chr17:22452211-22451735 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 294
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 316, 300

Conread position: 1-542
Cow position: chr17:22590184-22589643 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 340
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 30

Conread position: 1-543
Cow position: chr17:22553102-22552560 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 321
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 48

Conread position: 1-543
Cow position: chr17:44467778-44468320 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 332
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 53, 40

Conread position: 1-544
Cow position: chr17:22552850-22552307 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 313
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-544
Cow position: chr17:44467442-44467985 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 126

Conread position: 1-573
Cow position: chr17:41440953-41440381 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 49

Conread position: 1-579
Cow position: chr17:22589764-22589185 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 339
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 33

Conread position: 1-584
Cow position: chr17:41440785-41440202 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 107

Conread position: 1-592
Cow position: chr17:41441037-41440446 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 219

Conread position: 1-593
Cow position: chr17:22552094-22551502 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 52

Conread position: 1-593
Cow position: chr17:22552514-22551922 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 60

Conread position: 1-615
Cow position: chr17:22473336-22473951 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 369
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 215, 208

Conread position: 1-618
Cow position: chr17:22499393-22498774 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 372
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 62

Conread position: 1-634
Cow position: chr17:22499309-22498675 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 377
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 302, 307

Conread position: 1-642
Cow position: chr17:22552178-22551535 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 380
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 232, 227

Conread position: 1-677
Cow position: chr17:22553018-22552339 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 407
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 294, 301

Conread position: 1-704
Cow position: chr17:22552766-22552057 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 423
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 400, 392

Conread position: 1-712
Cow position: chr17:22552346-22551629 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 424
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 53, 43

Conread position: 1-712
Cow position: chr17:22552682-22551965 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 425
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 51, 42

Conread position: 2-428
Cow position: chr17:41440616-41440190 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 269
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 75, 70

Conread position: 3-716
Cow position: chr17:22589930-22589215 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 415
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 131, 125

Conread position: 4-592
Cow position: chr17:41441118-41440530 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 232

Conread position: 4-679
Cow position: chr17:22552595-22551917 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 402
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 34, 25

Conread position: 5-544
Cow position: chr17:22452375-22451836 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 100

Conread position: 7-451
Cow position: chr17:22452121-22451677 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 272
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 291, 299

Conread position: 7-601
Cow position: chr17:44467700-44468295 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 361
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 52, 58

Conread position: 22-575
Cow position: chr17:41440848-41440295 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 38

Conread position: 60-711
Cow position: chr17:22590209-22589553 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 389
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 536, 569

Conread position: 64-515
Cow position: chr17:22552367-22551916 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 276
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 337, 331

Conread position: 64-593
Cow position: chr17:22452400-22451871 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 322
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 8

Conread position: 65-544
Cow position: chr17:22553122-22552643 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 289
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 109, 114

Conread position: 76-593
Cow position: chr17:44467433-44467950 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 317
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 318, 324

Conread position: 83-543
Cow position: chr17:44467355-44467816 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 286
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 12, 392

Conread position: 88-593
Cow position: chr17:41441118-41440613 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 252

Conread position: 164-598
Cow position: chr17:22499398-22498964 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 259
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 70

Conread position: 166-712
Cow position: chr17:22553105-22552553 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 330
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 59, 55

Conread position: 179-598
Cow position: chr17:22473262-22473681 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 251
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 366, 372

Conread position: 192-593
Cow position: chr17:44467381-44467782 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 252
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 268-591
Cow position: chr17:44467373-44467696 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 199
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 40

Show alignments to all cow chromosomes.