Cow genome map
| Conread name: | Ss1.1-rspl24_p14.5 |
| Conread position: | 1-345 |
| Cow position: | chr17:44468030-44468374 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 126 |
| Conread position: | 1-477 |
| Cow position: | chr17:22452211-22451735 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 316, 300 |
| Conread position: | 1-542 |
| Cow position: | chr17:22590184-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 340 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 1-543 |
| Cow position: | chr17:22553102-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 1-543 |
| Cow position: | chr17:44467778-44468320 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 332 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 1-544 |
| Cow position: | chr17:22552850-22552307 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-544 |
| Cow position: | chr17:44467442-44467985 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 126 |
| Conread position: | 1-573 |
| Cow position: | chr17:41440953-41440381 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 1-579 |
| Cow position: | chr17:22589764-22589185 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 1-584 |
| Cow position: | chr17:41440785-41440202 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 1-592 |
| Cow position: | chr17:41441037-41440446 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 219 |
| Conread position: | 1-593 |
| Cow position: | chr17:22552094-22551502 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 1-593 |
| Cow position: | chr17:22552514-22551922 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 1-615 |
| Cow position: | chr17:22473336-22473951 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 369 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 215, 208 |
| Conread position: | 1-618 |
| Cow position: | chr17:22499393-22498774 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1-634 |
| Cow position: | chr17:22499309-22498675 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 377 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 302, 307 |
| Conread position: | 1-642 |
| Cow position: | chr17:22552178-22551535 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 380 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 1-677 |
| Cow position: | chr17:22553018-22552339 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 407 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 294, 301 |
| Conread position: | 1-704 |
| Cow position: | chr17:22552766-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 423 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 400, 392 |
| Conread position: | 1-712 |
| Cow position: | chr17:22552346-22551629 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 424 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 1-712 |
| Cow position: | chr17:22552682-22551965 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 425 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 2-428 |
| Cow position: | chr17:41440616-41440190 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 3-716 |
| Cow position: | chr17:22589930-22589215 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 415 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 125 |
| Conread position: | 4-592 |
| Cow position: | chr17:41441118-41440530 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 232 |
| Conread position: | 4-679 |
| Cow position: | chr17:22552595-22551917 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 402 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 5-544 |
| Cow position: | chr17:22452375-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 100 |
| Conread position: | 7-451 |
| Cow position: | chr17:22452121-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 291, 299 |
| Conread position: | 7-601 |
| Cow position: | chr17:44467700-44468295 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 361 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 22-575 |
| Cow position: | chr17:41440848-41440295 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 60-711 |
| Cow position: | chr17:22590209-22589553 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 536, 569 |
| Conread position: | 64-515 |
| Cow position: | chr17:22552367-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 337, 331 |
| Conread position: | 64-593 |
| Cow position: | chr17:22452400-22451871 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 65-544 |
| Cow position: | chr17:22553122-22552643 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 109, 114 |
| Conread position: | 76-593 |
| Cow position: | chr17:44467433-44467950 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 318, 324 |
| Conread position: | 83-543 |
| Cow position: | chr17:44467355-44467816 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 392 |
| Conread position: | 88-593 |
| Cow position: | chr17:41441118-41440613 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 164-598 |
| Cow position: | chr17:22499398-22498964 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 166-712 |
| Cow position: | chr17:22553105-22552553 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 179-598 |
| Cow position: | chr17:22473262-22473681 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 366, 372 |
| Conread position: | 192-593 |
| Cow position: | chr17:44467381-44467782 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-591 |
| Cow position: | chr17:44467373-44467696 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 40 |
Show alignments to all cow chromosomes.