Cow genome map

Conread name: Ss1.1-rspl24_p14.5

Conread position: 1-259
Cow position: chr19:20635294-20635036 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 57

Conread position: 1-338
Cow position: chr19:14948380-14948043 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 213
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 126, 148

Conread position: 1-428
Cow position: chr19:14960138-14959713 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 267
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 255, 264

Conread position: 1-460
Cow position: chr19:23613771-23614230 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 291
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 42, 54

Conread position: 1-461
Cow position: chr19:20635546-20635086 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 282
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 213, 238

Conread position: 1-498
Cow position: chr19:14940579-14941076 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 307
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-510
Cow position: chr19:23649977-23650486 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 311
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 19

Conread position: 1-515
Cow position: chr19:20678290-20678801 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 320
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 53, 41

Conread position: 1-536
Cow position: chr19:14940075-14940610 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 58

Conread position: 1-536
Cow position: chr19:23613351-23613886 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 333
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 25, 19

Conread position: 1-542
Cow position: chr19:14940159-14940700 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 328
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-542
Cow position: chr19:23614527-23615068 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 33

Conread position: 1-543
Cow position: chr19:20677534-20678076 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 327
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 142, 146

Conread position: 1-544
Cow position: chr19:20635630-20635087 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 328
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 69, 33

Conread position: 1-544
Cow position: chr19:23649725-23650268 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 141

Conread position: 1-587
Cow position: chr19:23649893-23650479 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 58

Conread position: 1-593
Cow position: chr19:14940243-14940835 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 141

Conread position: 1-593
Cow position: chr19:23614023-23614615 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 362
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 142

Conread position: 1-593
Cow position: chr19:23649473-23650065 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 146

Conread position: 1-603
Cow position: chr19:23597116-23597718 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 1-610
Cow position: chr19:14940495-14941105 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 373
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 137, 158

Conread position: 1-615
Cow position: chr19:23649641-23650255 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 355

Conread position: 1-624
Cow position: chr19:23649305-23649930 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 300

Conread position: 1-627
Cow position: chr19:23614359-23614987 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 61

Conread position: 1-643
Cow position: chr19:14940327-14940971 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 55

Conread position: 1-643
Cow position: chr19:43570379-43569745 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 388
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 37, 33

Conread position: 1-677
Cow position: chr19:23614191-23614870 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 44

Conread position: 1-704
Cow position: chr19:20677954-20678663 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 421
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 33

Conread position: 1-704
Cow position: chr19:23613855-23614563 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 127

Conread position: 1-705
Cow position: chr19:14959566-14958871 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 424
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 53, 33

Conread position: 1-705
Cow position: chr19:23613519-23614229 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 61

Conread position: 1-717
Cow position: chr19:14960472-14959759 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 232

Conread position: 2-548
Cow position: chr19:23596868-23597411 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 102

Conread position: 2-592
Cow position: chr19:14960387-14959801 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 0

Conread position: 2-597
Cow position: chr19:14960303-14959712 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 364
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 28, 35

Conread position: 4-670
Cow position: chr19:23649812-23650481 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 14-598
Cow position: chr19:14940424-14941008 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 555

Conread position: 14-629
Cow position: chr19:20677631-20678248 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 376
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 29

Conread position: 63-343
Cow position: chr19:14959588-14959308 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 63-587
Cow position: chr19:14940053-14940577 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-601
Cow position: chr19:20677512-20678052 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 325
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 41, 47

Conread position: 63-612
Cow position: chr19:43570243-43569694 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 326
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 86, 76

Conread position: 64-469
Cow position: chr19:14948401-14947996 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 247
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 85, 79

Conread position: 64-593
Cow position: chr19:23597095-23597624 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 146

Conread position: 69-542
Cow position: chr19:20635646-20635173 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 285
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 65, 56

Conread position: 77-643
Cow position: chr19:23649297-23649865 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 224

Conread position: 148-643
Cow position: chr19:23597095-23597592 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 0

Conread position: 160-477
Cow position: chr19:14959164-14958855 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 160-627
Cow position: chr19:20635639-20635170 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 286
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 54, 74

Conread position: 162-631
Cow position: chr19:14948470-14948000 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 284
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 322, 71

Conread position: 166-624
Cow position: chr19:14939988-14940448 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 285
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 422, 0

Conread position: 169-643
Cow position: chr19:23613351-23613827 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 292
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 438, 0

Conread position: 170-712
Cow position: chr19:23596868-23597413 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 326
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 437, 165

Conread position: 243-598
Cow position: chr19:14948471-14948119 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 213
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 244-511
Cow position: chr19:14959575-14959308 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 68, 73

Conread position: 813-989
Cow position: chr19:2881119-2881305 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 169

Conread position: 813-989
Cow position: chr19:28794306-28794119 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 170

Conread position: 813-989
Cow position: chr19:30777422-30777236 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 169

Show alignments to all cow chromosomes.