Cow genome map
| Conread name: | Ss1.1-rspl24_p14.5 |
| Conread position: | 1-259 |
| Cow position: | chr22:12475548-12475290 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 1-259 |
| Cow position: | chr22:12499711-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 1-338 |
| Cow position: | chr22:12385245-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 302, 316 |
| Conread position: | 1-341 |
| Cow position: | chr22:11701354-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 126, 145 |
| Conread position: | 1-342 |
| Cow position: | chr22:12458103-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-345 |
| Cow position: | chr22:11641111-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 1-376 |
| Cow position: | chr22:11666532-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 1-377 |
| Cow position: | chr22:14468228-14468604 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 1-415 |
| Cow position: | chr22:12399171-12398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 1-425 |
| Cow position: | chr22:12499543-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 298 |
| Conread position: | 1-452 |
| Cow position: | chr22:14429983-14430434 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-460 |
| Cow position: | chr22:11701186-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 297 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-460 |
| Cow position: | chr22:12418942-12418483 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 1-461 |
| Cow position: | chr22:14468060-14468520 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-462 |
| Cow position: | chr22:14442129-14442590 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 155 |
| Conread position: | 1-471 |
| Cow position: | chr22:12399255-12398785 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 1-512 |
| Cow position: | chr22:11640943-11641454 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 1-521 |
| Cow position: | chr22:14429899-14430419 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 327 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-522 |
| Cow position: | chr22:14430403-14430924 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 213, 233 |
| Conread position: | 1-523 |
| Cow position: | chr22:12431319-12430797 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 1-544 |
| Cow position: | chr22:14430319-14430862 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 1-547 |
| Cow position: | chr22:46654266-46654812 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 1-574 |
| Cow position: | chr22:12458355-12457782 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 1-582 |
| Cow position: | chr22:46654098-46654679 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 362 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 1-587 |
| Cow position: | chr22:12385499-12384911 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 1-593 |
| Cow position: | chr22:11640859-11641451 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 1-593 |
| Cow position: | chr22:12432411-12431819 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1-593 |
| Cow position: | chr22:12475884-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 1-593 |
| Cow position: | chr22:46654182-46654774 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 1-612 |
| Cow position: | chr22:14430067-14430680 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 130, 149 |
| Conread position: | 1-615 |
| Cow position: | chr22:11640775-11641389 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 1-629 |
| Cow position: | chr22:12498955-12499585 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 1-631 |
| Cow position: | chr22:12458523-12457891 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 1-636 |
| Cow position: | chr22:12399675-12399038 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 1-645 |
| Cow position: | chr22:12431235-12430589 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 292 |
| Conread position: | 1-679 |
| Cow position: | chr22:12476304-12475623 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 1-704 |
| Cow position: | chr22:12431739-12431030 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 274 |
| Conread position: | 1-704 |
| Cow position: | chr22:12431991-12431283 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 421 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 224, 220 |
| Conread position: | 1-705 |
| Cow position: | chr22:12476220-12475510 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 646 |
| Conread position: | 1-710 |
| Cow position: | chr22:12499039-12499754 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 399 |
| Conread position: | 1-712 |
| Cow position: | chr22:12431571-12430854 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 640 |
| Conread position: | 1-712 |
| Cow position: | chr22:12431907-12431190 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 1-712 |
| Cow position: | chr22:12432327-12431610 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 655 |
| Conread position: | 1-722 |
| Cow position: | chr22:12399591-12398863 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 210 |
| Conread position: | 2-536 |
| Cow position: | chr22:12432494-12431960 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 2-631 |
| Cow position: | chr22:12475967-12475336 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-631 |
| Cow position: | chr22:12499292-12499923 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 2-643 |
| Cow position: | chr22:12385666-12385021 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 2-712 |
| Cow position: | chr22:12476387-12475671 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 2-712 |
| Cow position: | chr22:12498872-12499588 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 655 |
| Conread position: | 2-716 |
| Cow position: | chr22:11640692-11641408 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 3-631 |
| Cow position: | chr22:12399757-12399127 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 4-507 |
| Cow position: | chr22:12385410-12384907 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 145, 139 |
| Conread position: | 4-544 |
| Cow position: | chr22:14429650-14430190 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 327 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 226, 206 |
| Conread position: | 4-582 |
| Cow position: | chr22:12419023-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 546 |
| Conread position: | 5-593 |
| Cow position: | chr22:12432071-12431483 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 358 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 6-322 |
| Cow position: | chr22:11666621-11666937 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 142, 131 |
| Conread position: | 6-376 |
| Cow position: | chr22:11701275-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 304 |
| Conread position: | 6-631 |
| Cow position: | chr22:12399838-12399211 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 104 |
| Conread position: | 9-460 |
| Cow position: | chr22:11666456-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 116, 139 |
| Conread position: | 9-544 |
| Cow position: | chr22:11701110-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 125 |
| Conread position: | 10-712 |
| Cow position: | chr22:11640616-11641324 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 373 |
| Conread position: | 22-544 |
| Cow position: | chr22:12458586-12458064 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 324 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 279, 300 |
| Conread position: | 55-379 |
| Cow position: | chr22:12544468-12544792 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 64-694 |
| Cow position: | chr22:12385688-12385052 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 377 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 65-291 |
| Cow position: | chr22:12419315-12419089 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-615 |
| Cow position: | chr22:12458627-12458077 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 69-544 |
| Cow position: | chr22:14468044-14468519 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 248, 219 |
| Conread position: | 87-544 |
| Cow position: | chr22:11666450-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 202, 222 |
| Conread position: | 87-593 |
| Cow position: | chr22:11701104-11701610 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 312, 301 |
| Conread position: | 109-555 |
| Cow position: | chr22:46654038-46654484 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 108, 125 |
| Conread position: | 126-615 |
| Cow position: | chr22:12476431-12475942 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 126-712 |
| Cow position: | chr22:12498828-12499420 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 191, 174 |
| Conread position: | 148-593 |
| Cow position: | chr22:12418963-12418518 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 169, 153 |
| Conread position: | 148-615 |
| Cow position: | chr22:12432432-12431965 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-536 |
| Cow position: | chr22:14467964-14468343 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 159-711 |
| Cow position: | chr22:12419305-12418730 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 222, 330 |
| Conread position: | 170-677 |
| Cow position: | chr22:12432494-12431984 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 419, 469 |
| Conread position: | 171-593 |
| Cow position: | chr22:11666450-11666872 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 224, 209 |
| Conread position: | 171-635 |
| Cow position: | chr22:11701104-11701570 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 144 |
| Conread position: | 207-631 |
| Cow position: | chr22:12385713-12385285 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 235-471 |
| Cow position: | chr22:12419313-12419077 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 244-729 |
| Cow position: | chr22:46654005-46654496 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 239, 220 |
| Conread position: | 249-645 |
| Cow position: | chr22:11666444-11666841 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 128, 133 |
| Conread position: | 333-624 |
| Cow position: | chr22:12432499-12432206 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 274, 0 |
Show alignments to all cow chromosomes.