Cow genome map

Conread name: Ss1.1-rspl24_p14.5

Conread position: 1-259
Cow position:
Alignm length: 262
Alignm identity: 177
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 61

Conread position: 1-259
Cow position:
Alignm length: 261
Alignm identity: 174
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 50, 61

Conread position: 1-338
Cow position:
Alignm length: 339
Alignm identity: 209
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 302, 316

Conread position: 1-341
Cow position:
Alignm length: 345
Alignm identity: 230
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 126, 145

Conread position: 1-342
Cow position:
Alignm length: 346
Alignm identity: 217
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 37, 33

Conread position: 1-345
Cow position:
Alignm length: 349
Alignm identity: 231
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 51, 34

Conread position: 1-376
Cow position:
Alignm length: 380
Alignm identity: 246
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 33

Conread position: 1-377
Cow position:
Alignm length: 383
Alignm identity: 238
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 33

Conread position: 1-415
Cow position:
Alignm length: 419
Alignm identity: 265
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 39, 33

Conread position: 1-425
Cow position:
Alignm length: 428
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 298

Conread position: 1-452
Cow position:
Alignm length: 452
Alignm identity: 272
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-460
Cow position:
Alignm length: 465
Alignm identity: 297
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 33

Conread position: 1-460
Cow position:
Alignm length: 463
Alignm identity: 291
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 46, 60

Conread position: 1-461
Cow position:
Alignm length: 466
Alignm identity: 283
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 33

Conread position: 1-462
Cow position:
Alignm length: 465
Alignm identity: 272
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 150, 155

Conread position: 1-471
Cow position:
Alignm length: 473
Alignm identity: 295
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 42, 33

Conread position: 1-512
Cow position:
Alignm length: 516
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 52

Conread position: 1-521
Cow position:
Alignm length: 525
Alignm identity: 327
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 33

Conread position: 1-522
Cow position:
Alignm length: 526
Alignm identity: 318
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 213, 233

Conread position: 1-523
Cow position:
Alignm length: 525
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 30

Conread position: 1-544
Cow position:
Alignm length: 549
Alignm identity: 333
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 37, 33

Conread position: 1-547
Cow position:
Alignm length: 549
Alignm identity: 335
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 102, 108

Conread position: 1-574
Cow position:
Alignm length: 577
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 142

Conread position: 1-582
Cow position:
Alignm length: 588
Alignm identity: 362
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 102, 108

Conread position: 1-587
Cow position:
Alignm length: 594
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 33

Conread position: 1-593
Cow position:
Alignm length: 599
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 54

Conread position: 1-593
Cow position:
Alignm length: 599
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 62

Conread position: 1-593
Cow position:
Alignm length: 594
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 64

Conread position: 1-593
Cow position:
Alignm length: 598
Alignm identity: 359
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 44, 72

Conread position: 1-612
Cow position:
Alignm length: 619
Alignm identity: 371
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 130, 149

Conread position: 1-615
Cow position:
Alignm length: 617
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 37

Conread position: 1-629
Cow position:
Alignm length: 632
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 142

Conread position: 1-631
Cow position:
Alignm length: 636
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 142

Conread position: 1-636
Cow position:
Alignm length: 641
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 42

Conread position: 1-645
Cow position:
Alignm length: 650
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 292

Conread position: 1-679
Cow position:
Alignm length: 684
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 142

Conread position: 1-704
Cow position:
Alignm length: 713
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 274

Conread position: 1-704
Cow position:
Alignm length: 712
Alignm identity: 421
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 224, 220

Conread position: 1-705
Cow position:
Alignm length: 712
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 588, 646

Conread position: 1-710
Cow position:
Alignm length: 718
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 399

Conread position: 1-712
Cow position:
Alignm length: 720
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 587, 640

Conread position: 1-712
Cow position:
Alignm length: 723
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 1-712
Cow position:
Alignm length: 719
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 582, 655

Conread position: 1-722
Cow position:
Alignm length: 730
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 210

Conread position: 2-536
Cow position:
Alignm length: 537
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 63

Conread position: 2-631
Cow position:
Alignm length: 634
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 2-631
Cow position:
Alignm length: 636
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 2-643
Cow position:
Alignm length: 652
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 54

Conread position: 2-712
Cow position:
Alignm length: 719
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 32

Conread position: 2-712
Cow position:
Alignm length: 718
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 582, 655

Conread position: 2-716
Cow position:
Alignm length: 723
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 62

Conread position: 3-631
Cow position:
Alignm length: 635
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 4-507
Cow position:
Alignm length: 505
Alignm identity: 299
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 145, 139

Conread position: 4-544
Cow position:
Alignm length: 544
Alignm identity: 327
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 226, 206

Conread position: 4-582
Cow position:
Alignm length: 580
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 542, 546

Conread position: 5-593
Cow position:
Alignm length: 592
Alignm identity: 358
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 35, 29

Conread position: 6-322
Cow position:
Alignm length: 319
Alignm identity: 206
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 142, 131

Conread position: 6-376
Cow position:
Alignm length: 372
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 304

Conread position: 6-631
Cow position:
Alignm length: 632
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 104

Conread position: 9-460
Cow position:
Alignm length: 456
Alignm identity: 284
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 116, 139

Conread position: 9-544
Cow position:
Alignm length: 540
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 125

Conread position: 10-712
Cow position:
Alignm length: 713
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 373

Conread position: 22-544
Cow position:
Alignm length: 526
Alignm identity: 324
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 279, 300

Conread position: 55-379
Cow position:
Alignm length: 327
Alignm identity: 201
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 40

Conread position: 64-694
Cow position:
Alignm length: 639
Alignm identity: 377
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 150, 182

Conread position: 65-291
Cow position:
Alignm length: 227
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 65-615
Cow position:
Alignm length: 553
Alignm identity: 338
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 85

Conread position: 69-544
Cow position:
Alignm length: 480
Alignm identity: 288
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 248, 219

Conread position: 87-544
Cow position:
Alignm length: 461
Alignm identity: 289
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 202, 222

Conread position: 87-593
Cow position:
Alignm length: 509
Alignm identity: 314
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 312, 301

Conread position: 109-555
Cow position:
Alignm length: 449
Alignm identity: 274
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 108, 125

Conread position: 126-615
Cow position:
Alignm length: 492
Alignm identity: 294
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 24

Conread position: 126-712
Cow position:
Alignm length: 595
Alignm identity: 350
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 191, 174

Conread position: 148-593
Cow position:
Alignm length: 447
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 169, 153

Conread position: 148-615
Cow position:
Alignm length: 468
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 156-536
Cow position:
Alignm length: 381
Alignm identity: 229
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 159-711
Cow position:
Alignm length: 578
Alignm identity: 319
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 222, 330

Conread position: 170-677
Cow position:
Alignm length: 512
Alignm identity: 318
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 419, 469

Conread position: 171-593
Cow position:
Alignm length: 426
Alignm identity: 267
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 224, 209

Conread position: 171-635
Cow position:
Alignm length: 471
Alignm identity: 289
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 132, 144

Conread position: 207-631
Cow position:
Alignm length: 432
Alignm identity: 258
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 43

Conread position: 235-471
Cow position:
Alignm length: 238
Alignm identity: 160
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 82, 75

Conread position: 244-729
Cow position:
Alignm length: 495
Alignm identity: 296
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 239, 220

Conread position: 249-645
Cow position:
Alignm length: 403
Alignm identity: 246
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 133

Conread position: 333-624
Cow position:
Alignm length: 294
Alignm identity: 186
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 274, 0

Show alignments to all cow chromosomes.