Cow genome map

Conread name: Ss1.1-rspl24_p14.5

Conread position: 1-268
Cow position: chr23:24654118-24654385 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 147, 141

Conread position: 1-291
Cow position: chr23:24535708-24535417 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 148, 142

Conread position: 1-330
Cow position: chr23:25724042-25723713 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 44, 52

Conread position: 1-392
Cow position: chr23:24639721-24640112 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 251
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-393
Cow position: chr23:24522567-24522175 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 251
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 316, 303

Conread position: 1-429
Cow position: chr23:25660320-25660748 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 273
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 37, 33

Conread position: 1-431
Cow position: chr23:24626309-24626739 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 275
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 39, 33

Conread position: 1-464
Cow position: chr23:25660236-25660699 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-477
Cow position: chr23:25698571-25698095 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 291
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 248, 263

Conread position: 1-497
Cow position: chr23:24535960-24535464 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 296
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-510
Cow position: chr23:24560637-24560128 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 33

Conread position: 1-510
Cow position: chr23:25626535-25627041 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-512
Cow position: chr23:24639553-24640064 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 33

Conread position: 1-585
Cow position: chr23:24547245-24546661 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 52

Conread position: 1-593
Cow position: chr23:24547329-24546737 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 108

Conread position: 1-593
Cow position: chr23:24639469-24640061 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 33

Conread position: 1-630
Cow position: chr23:24522814-24522188 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 373
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 192, 30

Conread position: 1-643
Cow position: chr23:25626283-25626924 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 238

Conread position: 1-712
Cow position: chr23:24560889-24560172 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 210

Conread position: 1-712
Cow position: chr23:24639301-24640018 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 55

Conread position: 2-341
Cow position: chr23:24535791-24535452 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 211
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 223, 218

Conread position: 4-465
Cow position: chr23:24535873-24535411 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 411

Conread position: 4-596
Cow position: chr23:24560718-24560125 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 139

Conread position: 4-632
Cow position: chr23:24536041-24535410 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 364
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 578, 0

Conread position: 4-693
Cow position: chr23:24639388-24640081 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 52

Conread position: 7-625
Cow position: chr23:25626121-25626737 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 373
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 477, 462

Conread position: 9-283
Cow position: chr23:24654042-24654316 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 179
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 10-630
Cow position: chr23:24639226-24639848 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 43

Conread position: 11-414
Cow position: chr23:25724116-25723713 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 98

Conread position: 11-548
Cow position: chr23:25660162-25660699 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-631
Cow position: chr23:25625961-25626579 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 362
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 40, 46

Conread position: 51-464
Cow position: chr23:24522601-24522188 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 263
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 26, 19

Conread position: 64-548
Cow position: chr23:24522669-24522188 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 297
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 232, 64

Conread position: 64-548
Cow position: chr23:25626514-25626995 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 310
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 7

Conread position: 64-582
Cow position: chr23:25698592-25698074 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 311
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 160, 170

Conread position: 75-704
Cow position: chr23:24560897-24560265 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 34

Conread position: 78-520
Cow position: chr23:24626302-24626744 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 401

Conread position: 78-630
Cow position: chr23:25660145-25660699 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 65

Conread position: 85-710
Cow position: chr23:24639217-24639848 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 374
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 164, 175

Conread position: 95-593
Cow position: chr23:24536034-24535536 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 139

Conread position: 108-393
Cow position: chr23:24654057-24654342 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 53, 35

Conread position: 109-512
Cow position: chr23:25724102-25723700 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 255
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 391, 0

Conread position: 155-696
Cow position: chr23:24522828-24522286 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 325
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 41

Conread position: 162-582
Cow position: chr23:24626302-24626722 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 166-587
Cow position: chr23:25626028-25626449 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 261
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 318, 307

Conread position: 170-523
Cow position: chr23:24654034-24654388 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 222
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 188-542
Cow position: chr23:25724107-25723753 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 230
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 25, 16

Conread position: 243-631
Cow position: chr23:24536054-24535664 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 232
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 188, 177

Conread position: 246-643
Cow position: chr23:24626302-24626701 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 347, 0

Conread position: 253-705
Cow position: chr23:24547329-24546871 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 340, 406

Conread position: 263-644
Cow position: chr23:25724116-25723733 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 35, 20

Show alignments to all cow chromosomes.