Cow genome map
| Conread name: | Ss1.1-rspl24_p14.5 |
| Conread position: | 1-375 |
| Cow position: | chr7:3180453-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 1-375 |
| Cow position: | chr7:18390414-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-426 |
| Cow position: | chr7:42878688-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 1-438 |
| Cow position: | chr7:3180369-3180809 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 1-461 |
| Cow position: | chr7:8277932-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 1-462 |
| Cow position: | chr7:8243303-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 77 |
| Conread position: | 1-512 |
| Cow position: | chr7:1014771-1015282 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 1-515 |
| Cow position: | chr7:3180285-3180799 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 213, 245 |
| Conread position: | 1-515 |
| Cow position: | chr7:11601103-11600589 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 1-536 |
| Cow position: | chr7:8325153-8325688 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 1-542 |
| Cow position: | chr7:8243219-8243759 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 1-542 |
| Cow position: | chr7:12293348-12293889 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 1-544 |
| Cow position: | chr7:3179949-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 341 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 1-544 |
| Cow position: | chr7:8324985-8325528 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 232, 212 |
| Conread position: | 1-545 |
| Cow position: | chr7:11601019-11600475 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 1-548 |
| Cow position: | chr7:8277764-8278311 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 109 |
| Conread position: | 1-549 |
| Cow position: | chr7:8277428-8277976 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 306, 299 |
| Conread position: | 1-554 |
| Cow position: | chr7:3180117-3180670 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 1-574 |
| Cow position: | chr7:3180201-3180774 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 232 |
| Conread position: | 1-581 |
| Cow position: | chr7:42878856-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 126 |
| Conread position: | 1-582 |
| Cow position: | chr7:28846507-28847088 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 340 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 1-587 |
| Cow position: | chr7:1014525-1015105 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 352 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 1-587 |
| Cow position: | chr7:3179781-3180367 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 1-593 |
| Cow position: | chr7:3179865-3180457 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 211 |
| Conread position: | 1-593 |
| Cow position: | chr7:18390162-18390754 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 1-608 |
| Cow position: | chr7:1014855-1015462 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 1-624 |
| Cow position: | chr7:8325489-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 1-625 |
| Cow position: | chr7:8277344-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 372 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 1-628 |
| Cow position: | chr7:8242883-8243511 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 370 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1-628 |
| Cow position: | chr7:8324901-8325530 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 380 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 1-643 |
| Cow position: | chr7:42879024-42878380 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 233 |
| Conread position: | 1-686 |
| Cow position: | chr7:42879108-42878421 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 413 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 228, 233 |
| Conread position: | 2-515 |
| Cow position: | chr7:1014688-1015201 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 3-544 |
| Cow position: | chr7:11601185-11600644 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 325 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 3-628 |
| Cow position: | chr7:8324735-8325362 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 365 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 3-643 |
| Cow position: | chr7:1439472-1440114 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 384 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 144, 115 |
| Conread position: | 4-642 |
| Cow position: | chr7:42879189-42878549 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 6-387 |
| Cow position: | chr7:8325746-8326127 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 7-583 |
| Cow position: | chr7:12293438-12294014 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 11-630 |
| Cow position: | chr7:28846433-28847054 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 43-452 |
| Cow position: | chr7:1439849-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 60-544 |
| Cow position: | chr7:42879217-42878733 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 160, 173 |
| Conread position: | 64-467 |
| Cow position: | chr7:18390393-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-536 |
| Cow position: | chr7:8277575-8278047 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 64-598 |
| Cow position: | chr7:3179760-3180294 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 64-677 |
| Cow position: | chr7:3179676-3180292 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 64-712 |
| Cow position: | chr7:1014420-1015064 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 387 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 156, 170 |
| Conread position: | 70-593 |
| Cow position: | chr7:18390147-18390670 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 76-542 |
| Cow position: | chr7:12293339-12293805 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 152 |
| Conread position: | 90-543 |
| Cow position: | chr7:12293269-12293722 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 99-593 |
| Cow position: | chr7:28846437-28846931 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 382, 374 |
| Conread position: | 161-642 |
| Cow position: | chr7:42879284-42878801 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 134, 155 |
| Conread position: | 164-544 |
| Cow position: | chr7:11601193-11600812 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 6, 367 |
| Conread position: | 813-989 |
| Cow position: | chr7:37062416-37062602 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 169 |
Show alignments to all cow chromosomes.