Cow genome map

Conread name: Ss1.1-rspl36_h19.5

Conread position: 405-575
Cow position: chr11:6319906-6320084 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 17

Conread position: 409-545
Cow position: chr11:68870440-68870581 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 418-576
Cow position: chr11:52690314-52690473 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 18

Conread position: 419-575
Cow position: chr11:19578808-19578967 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 76

Conread position: 429-576
Cow position: chr11:30165714-30165557 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 430-575
Cow position: chr11:37565071-37564922 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 432-563
Cow position: chr11:66685713-66685843 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 7

Conread position: 432-573
Cow position: chr11:80586464-80586325 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 7

Conread position: 432-575
Cow position: chr11:6581033-6580881 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 432-575
Cow position: chr11:40538748-40538601 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 432-575
Cow position: chr11:68592219-68592066 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 435-575
Cow position: chr11:49149245-49149098 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 436-573
Cow position: chr11:30638756-30638899 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 436-575
Cow position: chr11:12742298-12742442 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 43

Conread position: 436-575
Cow position: chr11:51683411-51683264 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 437-573
Cow position: chr11:2937478-2937613 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 88

Conread position: 437-574
Cow position: chr11:65495150-65495290 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 437-575
Cow position: chr11:25620197-25620342 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 65, 8

Conread position: 437-575
Cow position: chr11:62102252-62102399 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 437-575
Cow position: chr11:62811491-62811346 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 139

Conread position: 438-575
Cow position: chr11:55744661-55744516 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 12

Conread position: 438-576
Cow position: chr11:75388184-75388325 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 439-551
Cow position: chr11:77017422-77017308 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 439-572
Cow position: chr11:2084337-2084195 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 439-573
Cow position: chr11:49396334-49396475 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 439-573
Cow position: chr11:82732957-82733099 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 439-574
Cow position: chr11:19147951-19148087 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 11

Conread position: 439-575
Cow position: chr11:1485042-1485178 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 77

Conread position: 439-575
Cow position: chr11:43914484-43914340 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 63, 11

Conread position: 439-575
Cow position: chr11:44176788-44176644 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 54

Conread position: 442-544
Cow position: chr11:7615991-7616095 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-573
Cow position: chr11:36092730-36092865 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 442-573
Cow position: chr11:49153129-49152999 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 74

Conread position: 442-573
Cow position: chr11:75915174-75915044 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 17

Conread position: 442-576
Cow position: chr11:31525467-31525603 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 444-573
Cow position: chr11:5218978-5219110 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 99

Conread position: 445-555
Cow position: chr11:31508089-31507978 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 57, 84

Conread position: 445-565
Cow position: chr11:36286890-36286771 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 83, 17

Conread position: 445-573
Cow position: chr11:38223608-38223737 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 58, 10

Conread position: 445-573
Cow position: chr11:43641574-43641437 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 445-573
Cow position: chr11:51729460-51729337 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 119, 58

Conread position: 445-573
Cow position: chr11:81175784-81175648 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 445-575
Cow position: chr11:15366792-15366924 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 113
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 57, 76

Conread position: 445-576
Cow position: chr11:86925778-86925913 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 21

Conread position: 446-573
Cow position: chr11:28078674-28078544 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 446-573
Cow position: chr11:41213237-41213100 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-573
Cow position: chr11:63849765-63849901 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 446-574
Cow position: chr11:13397327-13397458 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 93

Conread position: 446-575
Cow position: chr11:3715007-3714869 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 446-575
Cow position: chr11:5176196-5176328 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 446-575
Cow position: chr11:7571805-7571673 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr11:16315059-16314921 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr11:23220545-23220411 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 446-575
Cow position: chr11:25968668-25968806 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr11:27907955-27907825 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 118

Conread position: 446-575
Cow position: chr11:39462804-39462672 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr11:66041457-66041327 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 78

Conread position: 446-575
Cow position: chr11:69417588-69417450 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 447-573
Cow position: chr11:41278371-41278236 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 447-575
Cow position: chr11:25791509-25791646 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr11:50629454-50629325 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 21

Conread position: 447-575
Cow position: chr11:65939678-65939814 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 42

Conread position: 447-576
Cow position: chr11:77241886-77241752 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 448-574
Cow position: chr11:80370297-80370162 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 450-569
Cow position: chr11:66104212-66104334 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 450-573
Cow position: chr11:63435703-63435571 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 450-576
Cow position: chr11:63485113-63484985 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 110
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 52, 68

Conread position: 452-557
Cow position: chr11:36180622-36180514 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 452-572
Cow position: chr11:62742469-62742594 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr11:17369705-17369579 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr11:19247026-19247151 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 51, 34

Conread position: 452-575
Cow position: chr11:26823291-26823158 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr11:33369331-33369199 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr11:37099993-37100124 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr11:48660109-48659983 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 452-575
Cow position: chr11:78380890-78381016 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 452-575
Cow position: chr11:84228544-84228669 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 84

Conread position: 453-575
Cow position: chr11:25751046-25750925 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 50

Conread position: 453-575
Cow position: chr11:57608288-57608411 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 89

Conread position: 459-572
Cow position: chr11:13042976-13043094 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 104
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 459-575
Cow position: chr11:60720282-60720407 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 460-573
Cow position: chr11:64022939-64023054 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 92

Conread position: 461-570
Cow position: chr11:26535954-26535839 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 462-569
Cow position: chr11:57873977-57873863 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 462-575
Cow position: chr11:39854853-39854969 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 463-575
Cow position: chr11:64409134-64409019 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 468-575
Cow position: chr11:18508866-18508982 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.