Cow genome map
| Conread name: | Ss1.1-rspl36_h19.5 |
| Conread position: | 406-575 |
| Cow position: | chr14:29964818-29964996 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 428-575 |
| Cow position: | chr14:27364401-27364556 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 428-576 |
| Cow position: | chr14:21357379-21357535 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 430-560 |
| Cow position: | chr14:27733433-27733567 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 431-575 |
| Cow position: | chr14:36425578-36425431 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 432-575 |
| Cow position: | chr14:15428305-15428454 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 432-576 |
| Cow position: | chr14:15944841-15944686 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 433-572 |
| Cow position: | chr14:10920740-10920590 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 433-572 |
| Cow position: | chr14:25889922-25890068 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 433-575 |
| Cow position: | chr14:33229573-33229424 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 434-573 |
| Cow position: | chr14:37422944-37422808 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 85 |
| Conread position: | 435-573 |
| Cow position: | chr14:10721872-10721732 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 437-575 |
| Cow position: | chr14:12137849-12137993 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 437-575 |
| Cow position: | chr14:13385198-13385344 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 437-575 |
| Cow position: | chr14:18412762-18412615 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 437-575 |
| Cow position: | chr14:28465386-28465239 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 437-575 |
| Cow position: | chr14:33328797-33328935 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 437-576 |
| Cow position: | chr14:35421254-35421106 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 438-575 |
| Cow position: | chr14:38144277-38144131 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 439-563 |
| Cow position: | chr14:12635043-12634918 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 439-572 |
| Cow position: | chr14:2975250-2975111 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 439-573 |
| Cow position: | chr14:36151158-36151299 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 439-573 |
| Cow position: | chr14:49487798-49487935 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 439-575 |
| Cow position: | chr14:8083030-8083174 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 106 |
| Conread position: | 439-575 |
| Cow position: | chr14:33247581-33247453 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 6 |
| Conread position: | 439-575 |
| Cow position: | chr14:33457209-33457067 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 439-576 |
| Cow position: | chr14:23442861-23442999 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 440-575 |
| Cow position: | chr14:21946224-21946368 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 441-573 |
| Cow position: | chr14:48744351-48744489 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 442-571 |
| Cow position: | chr14:20010672-20010533 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 442-571 |
| Cow position: | chr14:37152097-37151967 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 442-575 |
| Cow position: | chr14:19774378-19774243 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 442-576 |
| Cow position: | chr14:20245331-20245192 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 443-573 |
| Cow position: | chr14:20466774-20466911 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 445-570 |
| Cow position: | chr14:18309460-18309336 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 445-570 |
| Cow position: | chr14:21535463-21535335 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 445-573 |
| Cow position: | chr14:24749301-24749426 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 445-575 |
| Cow position: | chr14:8591003-8590872 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 445-575 |
| Cow position: | chr14:25912494-25912627 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 445-576 |
| Cow position: | chr14:23424105-23424238 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 446-544 |
| Cow position: | chr14:38411146-38411246 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-568 |
| Cow position: | chr14:15211775-15211899 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-571 |
| Cow position: | chr14:39795463-39795591 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-573 |
| Cow position: | chr14:22988876-22989008 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-574 |
| Cow position: | chr14:30023359-30023222 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-574 |
| Cow position: | chr14:35381430-35381566 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr14:4227382-4227246 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 446-575 |
| Cow position: | chr14:5044517-5044647 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 446-575 |
| Cow position: | chr14:10838704-10838836 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 446-575 |
| Cow position: | chr14:11981305-11981441 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 446-575 |
| Cow position: | chr14:18270201-18270337 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr14:21593160-21593027 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 446-575 |
| Cow position: | chr14:28924006-28924144 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 446-576 |
| Cow position: | chr14:36443176-36443041 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-576 |
| Cow position: | chr14:36723248-36723387 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 447-562 |
| Cow position: | chr14:38529821-38529937 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-566 |
| Cow position: | chr14:6389041-6388918 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 447-570 |
| Cow position: | chr14:11643404-11643278 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-575 |
| Cow position: | chr14:11079297-11079428 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-575 |
| Cow position: | chr14:18559215-18559085 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 447-575 |
| Cow position: | chr14:19988220-19988083 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-575 |
| Cow position: | chr14:23104154-23104022 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-575 |
| Cow position: | chr14:28304945-28304809 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 447-575 |
| Cow position: | chr14:29282594-29282731 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 450-573 |
| Cow position: | chr14:24785504-24785632 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 452-573 |
| Cow position: | chr14:4481521-4481645 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 452-575 |
| Cow position: | chr14:11470303-11470172 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 452-575 |
| Cow position: | chr14:12244535-12244409 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-575 |
| Cow position: | chr14:40754397-40754271 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-575 |
| Cow position: | chr14:45955134-45955267 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 453-575 |
| Cow position: | chr14:18941440-18941309 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 453-576 |
| Cow position: | chr14:35503211-35503337 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 459-563 |
| Cow position: | chr14:40347788-40347680 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 477-575 |
| Cow position: | chr14:25277645-25277746 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.