Cow genome map
| Conread name: | Ss1.1-rspl36_h19.5 |
| Conread position: | 400-573 |
| Cow position: | chr15:21822088-21821903 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 418-575 |
| Cow position: | chr15:30001556-30001717 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 428-575 |
| Cow position: | chr15:40562813-40562659 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 429-574 |
| Cow position: | chr15:20566000-20566153 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 432-573 |
| Cow position: | chr15:21893653-21893800 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 433-573 |
| Cow position: | chr15:22553666-22553520 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 433-575 |
| Cow position: | chr15:16230103-16230245 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 434-575 |
| Cow position: | chr15:20459436-20459285 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 435-563 |
| Cow position: | chr15:26367364-26367236 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 436-573 |
| Cow position: | chr15:26529775-26529911 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 437-573 |
| Cow position: | chr15:22531552-22531688 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 95 |
| Conread position: | 438-575 |
| Cow position: | chr15:35641893-35642037 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 439-570 |
| Cow position: | chr15:41321071-41320937 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 439-571 |
| Cow position: | chr15:19950367-19950498 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 439-572 |
| Cow position: | chr15:52791821-52791962 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 439-573 |
| Cow position: | chr15:36643965-36643828 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 439-575 |
| Cow position: | chr15:3591283-3591417 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 439-575 |
| Cow position: | chr15:17084087-17084232 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 439-575 |
| Cow position: | chr15:19554046-19553901 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 439-575 |
| Cow position: | chr15:48052717-48052581 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 440-571 |
| Cow position: | chr15:18763158-18763017 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 440-576 |
| Cow position: | chr15:36621283-36621421 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 441-573 |
| Cow position: | chr15:5717603-5717731 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 441-573 |
| Cow position: | chr15:19402888-19403026 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 441-573 |
| Cow position: | chr15:39286528-39286388 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 441-575 |
| Cow position: | chr15:4500581-4500726 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 441-575 |
| Cow position: | chr15:25349857-25349991 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 442-570 |
| Cow position: | chr15:49273846-49273975 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 442-573 |
| Cow position: | chr15:6037562-6037433 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 120, 81 |
| Conread position: | 442-573 |
| Cow position: | chr15:25208875-25208736 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 442-573 |
| Cow position: | chr15:43114835-43114699 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 442-575 |
| Cow position: | chr15:45545-45401 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 442-575 |
| Cow position: | chr15:41049573-41049439 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 444-563 |
| Cow position: | chr15:6219935-6219815 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 444-573 |
| Cow position: | chr15:12913615-12913477 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 445-573 |
| Cow position: | chr15:9128780-9128650 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 445-575 |
| Cow position: | chr15:22938880-22938739 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 445-576 |
| Cow position: | chr15:43626351-43626493 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 446-570 |
| Cow position: | chr15:795129-795003 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 446-572 |
| Cow position: | chr15:36457729-36457599 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-573 |
| Cow position: | chr15:5409006-5408876 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-573 |
| Cow position: | chr15:11630212-11630081 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 446-573 |
| Cow position: | chr15:36388187-36388312 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 446-574 |
| Cow position: | chr15:6332574-6332442 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:17140129-17140000 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 55 |
| Conread position: | 446-575 |
| Cow position: | chr15:18941922-18942053 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:19771025-19771159 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:20370564-20370432 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:21941960-21941822 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:22444099-22443961 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:27900617-27900487 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:28924874-28924732 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:43674058-43673921 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr15:51211185-51211312 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 51 |
| Conread position: | 447-561 |
| Cow position: | chr15:20649454-20649576 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-569 |
| Cow position: | chr15:36539833-36539961 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-574 |
| Cow position: | chr15:17124582-17124446 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 447-575 |
| Cow position: | chr15:20906140-20906009 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 452-573 |
| Cow position: | chr15:23572795-23572665 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-573 |
| Cow position: | chr15:31929004-31928875 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 452-575 |
| Cow position: | chr15:16667604-16667472 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-575 |
| Cow position: | chr15:17471821-17471947 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 453-574 |
| Cow position: | chr15:37719693-37719568 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 453-575 |
| Cow position: | chr15:11635312-11635435 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 454-575 |
| Cow position: | chr15:14760744-14760614 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 457-573 |
| Cow position: | chr15:4138033-4138157 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 460-572 |
| Cow position: | chr15:4356950-4357068 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 462-570 |
| Cow position: | chr15:14572584-14572692 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 70 |
Show alignments to all cow chromosomes.