Cow genome map

Conread name: Ss1.1-rspl36_h19.5

Conread position: 412-575
Cow position: chr18:14871404-14871572 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 30

Conread position: 414-574
Cow position: chr18:21528848-21528684 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 14

Conread position: 414-575
Cow position: chr18:21751579-21751411 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 88, 39

Conread position: 415-575
Cow position: chr18:36098556-36098399 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 44

Conread position: 417-575
Cow position: chr18:45573576-45573413 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 85, 25

Conread position: 419-571
Cow position: chr18:10213993-10214153 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 419-575
Cow position: chr18:19765379-19765222 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 33

Conread position: 422-573
Cow position: chr18:4851289-4851448 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 62

Conread position: 426-570
Cow position: chr18:45897915-45897769 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 124

Conread position: 429-573
Cow position: chr18:19809496-19809647 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 430-575
Cow position: chr18:38211347-38211189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 431-575
Cow position: chr18:5632448-5632301 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 432-575
Cow position: chr18:39811401-39811550 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 433-573
Cow position: chr18:2144750-2144606 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 9

Conread position: 433-573
Cow position: chr18:18844193-18844051 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 94

Conread position: 433-573
Cow position: chr18:29264184-29264320 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 92

Conread position: 437-570
Cow position: chr18:9974153-9974290 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 116

Conread position: 437-573
Cow position: chr18:9010884-9010743 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 439-573
Cow position: chr18:39460391-39460255 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 34

Conread position: 439-573
Cow position: chr18:42967280-42967147 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 44

Conread position: 439-575
Cow position: chr18:16313551-16313412 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 439-575
Cow position: chr18:20998236-20998382 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 70, 14

Conread position: 442-564
Cow position: chr18:38669651-38669783 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 442-570
Cow position: chr18:51757266-51757131 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 442-573
Cow position: chr18:35857752-35857889 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr18:728191-728059 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 10

Conread position: 442-575
Cow position: chr18:8208251-8208392 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 443-570
Cow position: chr18:29474908-29474781 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 122, 10

Conread position: 443-573
Cow position: chr18:46048925-46048787 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 443-575
Cow position: chr18:42290163-42290294 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 63

Conread position: 443-575
Cow position: chr18:42292891-42293022 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 63

Conread position: 445-553
Cow position: chr18:18956713-18956825 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 445-561
Cow position: chr18:4264227-4264345 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 445-569
Cow position: chr18:11867507-11867379 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 445-570
Cow position: chr18:641146-641275 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 107

Conread position: 445-572
Cow position: chr18:135491-135620 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 78

Conread position: 445-572
Cow position: chr18:47417169-47417033 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 445-572
Cow position: chr18:51405748-51405875 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 58, 34

Conread position: 445-573
Cow position: chr18:12059163-12059032 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 445-573
Cow position: chr18:18816100-18815962 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 48, 106

Conread position: 445-573
Cow position: chr18:55499239-55499106 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 445-575
Cow position: chr18:1144023-1144151 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 30

Conread position: 445-575
Cow position: chr18:23821660-23821799 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 32

Conread position: 445-575
Cow position: chr18:29080962-29080840 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 119, 35

Conread position: 446-559
Cow position: chr18:44909220-44909103 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 446-563
Cow position: chr18:32960247-32960123 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-573
Cow position: chr18:1571071-1571202 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 446-573
Cow position: chr18:1931291-1931423 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 446-573
Cow position: chr18:5072249-5072375 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 83

Conread position: 446-573
Cow position: chr18:24719477-24719348 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 81

Conread position: 446-574
Cow position: chr18:3180578-3180445 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:7487403-7487265 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr18:11657827-11657689 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:12584676-12584806 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 0

Conread position: 446-575
Cow position: chr18:16659260-16659399 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:33364378-33364245 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:34490449-34490314 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:52251686-52251824 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr18:55692986-55692849 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 446-575
Cow position: chr18:56463560-56463698 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-576
Cow position: chr18:18918795-18918928 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 447-560
Cow position: chr18:30295442-30295557 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 447-567
Cow position: chr18:56181291-56181415 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 447-571
Cow position: chr18:52387051-52387183 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 447-572
Cow position: chr18:41703001-41702870 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 111

Conread position: 447-573
Cow position: chr18:43283589-43283721 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 447-575
Cow position: chr18:17195179-17195312 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr18:37690318-37690183 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 448-575
Cow position: chr18:3212046-3211911 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 450-570
Cow position: chr18:10757893-10758017 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 450-575
Cow position: chr18:12273818-12273691 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 43

Conread position: 452-560
Cow position: chr18:5647970-5647862 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 74

Conread position: 452-575
Cow position: chr18:5189529-5189660 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 452-575
Cow position: chr18:31556995-31557127 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr18:35235859-35235990 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 453-562
Cow position: chr18:15279804-15279693 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 453-573
Cow position: chr18:4495729-4495851 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 50, 37

Conread position: 453-575
Cow position: chr18:14172052-14172178 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 453-575
Cow position: chr18:25757153-25757283 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 454-573
Cow position: chr18:51643209-51643330 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 99

Conread position: 458-573
Cow position: chr18:22045255-22045379 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 458-575
Cow position: chr18:51655026-51655146 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 80

Conread position: 459-573
Cow position: chr18:43014715-43014832 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 93

Conread position: 459-575
Cow position: chr18:24022770-24022651 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 459-575
Cow position: chr18:40047349-40047467 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 91

Conread position: 460-575
Cow position: chr18:42427770-42427653 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 38

Conread position: 462-574
Cow position: chr18:35874230-35874112 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 465-575
Cow position: chr18:24759510-24759623 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.