Cow genome map

Conread name: Ss1.1-rspl36_h19.5

Conread position: 406-568
Cow position: chr21:19136596-19136764 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 11

Conread position: 411-573
Cow position: chr21:43656003-43655834 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 10

Conread position: 424-575
Cow position: chr21:745457-745305 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 113

Conread position: 425-571
Cow position: chr21:44251551-44251709 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 58

Conread position: 429-573
Cow position: chr21:36508512-36508366 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 50

Conread position: 431-573
Cow position: chr21:6051785-6051635 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 23

Conread position: 433-565
Cow position: chr21:31278465-31278326 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 17

Conread position: 434-569
Cow position: chr21:29011699-29011836 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 110

Conread position: 434-575
Cow position: chr21:5345160-5345008 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 434-575
Cow position: chr21:42501330-42501180 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 104

Conread position: 437-572
Cow position: chr21:30976993-30977130 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 95

Conread position: 437-575
Cow position: chr21:6292026-6291876 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 438-573
Cow position: chr21:23587145-23587014 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 65

Conread position: 438-574
Cow position: chr21:15869958-15869821 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 12

Conread position: 438-575
Cow position: chr21:29658547-29658405 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 438-575
Cow position: chr21:30938393-30938536 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 439-570
Cow position: chr21:42227425-42227564 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 439-572
Cow position: chr21:16152713-16152574 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 439-572
Cow position: chr21:20185519-20185381 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 115

Conread position: 439-573
Cow position: chr21:10727782-10727641 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 439-573
Cow position: chr21:30970208-30970067 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 52

Conread position: 439-575
Cow position: chr21:4109049-4108905 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 439-575
Cow position: chr21:6998213-6998077 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 63, 72

Conread position: 440-573
Cow position: chr21:32339474-32339608 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 123, 0

Conread position: 440-575
Cow position: chr21:28244738-28244600 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 116
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 60, 0

Conread position: 441-575
Cow position: chr21:10004613-10004756 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 441-575
Cow position: chr21:40571201-40571336 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 61, 78

Conread position: 442-551
Cow position: chr21:28955888-28955775 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-573
Cow position: chr21:6713255-6713391 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr21:5218977-5218839 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr21:8430828-8430970 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr21:24757206-24757070 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 442-575
Cow position: chr21:25345133-25344991 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr21:27677752-27677610 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 442-576
Cow position: chr21:36763331-36763190 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 442-576
Cow position: chr21:38449183-38449320 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 444-570
Cow position: chr21:438823-438697 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 82

Conread position: 445-546
Cow position: chr21:40432730-40432627 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 445-569
Cow position: chr21:12154391-12154264 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 445-572
Cow position: chr21:14464852-14464716 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 445-573
Cow position: chr21:29418839-29418700 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 445-574
Cow position: chr21:37014159-37014297 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 445-575
Cow position: chr21:3379487-3379622 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 446-560
Cow position: chr21:4281619-4281734 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 9

Conread position: 446-569
Cow position: chr21:17072863-17072738 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 83

Conread position: 446-571
Cow position: chr21:38482647-38482513 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-572
Cow position: chr21:44724111-44724240 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 446-573
Cow position: chr21:8545754-8545891 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 446-573
Cow position: chr21:18495480-18495353 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 80

Conread position: 446-574
Cow position: chr21:30359085-30359216 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr21:3135603-3135739 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 36

Conread position: 446-575
Cow position: chr21:12322763-12322627 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 446-575
Cow position: chr21:12473797-12473931 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr21:21940146-21940277 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 86

Conread position: 446-575
Cow position: chr21:26828706-26828844 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr21:27521077-27521210 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 22

Conread position: 446-575
Cow position: chr21:37706147-37706285 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 446-575
Cow position: chr21:41738173-41738038 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 447-570
Cow position: chr21:42145083-42144958 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 104

Conread position: 447-572
Cow position: chr21:28919267-28919395 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 447-574
Cow position: chr21:29014653-29014780 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 85

Conread position: 447-575
Cow position: chr21:24222253-24222383 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 93

Conread position: 447-575
Cow position: chr21:31658890-31659021 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 447-575
Cow position: chr21:40475765-40475628 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 447-575
Cow position: chr21:42189496-42189626 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 82

Conread position: 447-575
Cow position: chr21:45970915-45971044 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 73

Conread position: 448-575
Cow position: chr21:10264298-10264163 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 114

Conread position: 448-575
Cow position: chr21:27863256-27863383 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 72

Conread position: 448-575
Cow position: chr21:38943345-38943478 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 450-575
Cow position: chr21:20160939-20160806 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 31

Conread position: 450-575
Cow position: chr21:32536652-32536526 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 74

Conread position: 452-569
Cow position: chr21:11353323-11353196 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 452-572
Cow position: chr21:15444823-15444952 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 452-573
Cow position: chr21:22718524-22718652 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 452-573
Cow position: chr21:48482271-48482398 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 452-574
Cow position: chr21:17983230-17983108 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 112, 16

Conread position: 452-574
Cow position: chr21:44829497-44829628 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 452-575
Cow position: chr21:17184177-17184047 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 452-575
Cow position: chr21:17890562-17890432 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 452-575
Cow position: chr21:23568484-23568358 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 453-575
Cow position: chr21:28882441-28882311 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 453-576
Cow position: chr21:10410482-10410351 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 455-575
Cow position: chr21:17193492-17193619 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 458-573
Cow position: chr21:40916734-40916615 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 95

Conread position: 460-573
Cow position: chr21:31258720-31258598 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 460-573
Cow position: chr21:41287545-41287661 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 461-573
Cow position: chr21:40846760-40846640 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 462-573
Cow position: chr21:3360767-3360883 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 465-573
Cow position: chr21:7424767-7424882 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Show alignments to all cow chromosomes.