Cow genome map

Conread name: Ss1.1-rspl36_h19.5

Conread position: 368-573
Cow position: chr22:12678149-12678357 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 135, 63

Conread position: 395-572
Cow position: chr22:16806838-16806656 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 409-575
Cow position: chr22:16274920-16275090 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 93, 30

Conread position: 429-575
Cow position: chr22:4156601-4156754 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 430-575
Cow position: chr22:4736239-4736086 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 71, 23

Conread position: 431-574
Cow position: chr22:30687233-30687090 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 88

Conread position: 432-575
Cow position: chr22:5712796-5712649 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 47

Conread position: 433-575
Cow position: chr22:12313630-12313487 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 86

Conread position: 433-575
Cow position: chr22:19306111-19305961 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 20

Conread position: 435-573
Cow position: chr22:12188265-12188416 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 435-573
Cow position: chr22:12195351-12195503 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 437-574
Cow position: chr22:23265442-23265588 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 437-575
Cow position: chr22:27828586-27828441 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 437-575
Cow position: chr22:39602492-39602345 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 438-561
Cow position: chr22:25731081-25731204 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 15

Conread position: 438-573
Cow position: chr22:1849282-1849139 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 438-575
Cow position: chr22:26268054-26267910 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 439-571
Cow position: chr22:43130936-43131077 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 439-572
Cow position: chr22:3282622-3282760 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 112

Conread position: 439-572
Cow position: chr22:8733141-8733271 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 90

Conread position: 439-573
Cow position: chr22:8287385-8287248 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 439-573
Cow position: chr22:12316012-12315875 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 439-573
Cow position: chr22:12777179-12777312 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 79

Conread position: 439-573
Cow position: chr22:13286653-13286513 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 439-573
Cow position: chr22:37202054-37201914 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 115

Conread position: 439-575
Cow position: chr22:2704504-2704361 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 439-575
Cow position: chr22:3061156-3061012 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 439-575
Cow position: chr22:7913659-7913524 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 81

Conread position: 439-575
Cow position: chr22:13726912-13727050 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 91, 29

Conread position: 439-575
Cow position: chr22:26417485-26417346 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 439-575
Cow position: chr22:30293895-30293751 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 117

Conread position: 439-575
Cow position: chr22:35627555-35627411 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 121

Conread position: 439-575
Cow position: chr22:41854107-41853970 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 85

Conread position: 440-571
Cow position: chr22:28634377-28634513 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 440-573
Cow position: chr22:530374-530513 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 440-575
Cow position: chr22:13930484-13930343 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 441-573
Cow position: chr22:8090334-8090467 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 62, 9

Conread position: 441-574
Cow position: chr22:16340058-16339919 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 441-575
Cow position: chr22:12447651-12447519 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 61, 93

Conread position: 441-575
Cow position: chr22:24557320-24557463 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 140

Conread position: 442-568
Cow position: chr22:14178627-14178757 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 85

Conread position: 442-570
Cow position: chr22:18926558-18926424 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 34

Conread position: 442-575
Cow position: chr22:534691-534562 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 61

Conread position: 442-575
Cow position: chr22:42685084-42684954 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 104

Conread position: 444-573
Cow position: chr22:21499644-21499781 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 445-564
Cow position: chr22:34668514-34668391 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 445-573
Cow position: chr22:45771826-45771959 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 445-575
Cow position: chr22:2408930-2409069 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 445-575
Cow position: chr22:3470489-3470352 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 445-575
Cow position: chr22:8540074-8539940 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 445-576
Cow position: chr22:2876599-2876736 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 445-576
Cow position: chr22:44410915-44410783 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 85

Conread position: 446-555
Cow position: chr22:29345785-29345673 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 446-562
Cow position: chr22:5644226-5644350 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 446-570
Cow position: chr22:29219704-29219838 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:1552093-1551964 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 83

Conread position: 446-575
Cow position: chr22:4083859-4083997 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr22:6149190-6149328 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 446-575
Cow position: chr22:8883208-8883074 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:9372724-9372584 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:10913856-10913727 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 33

Conread position: 446-575
Cow position: chr22:11696997-11697132 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 33

Conread position: 446-575
Cow position: chr22:11836876-11837001 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 118, 61

Conread position: 446-575
Cow position: chr22:14488136-14487998 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:22860713-22860849 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 446-575
Cow position: chr22:23630158-23630289 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 56, 38

Conread position: 446-575
Cow position: chr22:27275663-27275525 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:28937744-28937873 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 102

Conread position: 446-575
Cow position: chr22:30176918-30176780 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 446-575
Cow position: chr22:32698961-32698823 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr22:34609194-34609068 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 36

Conread position: 446-575
Cow position: chr22:36762235-36762101 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 56, 11

Conread position: 446-575
Cow position: chr22:44642444-44642312 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 447-571
Cow position: chr22:43730479-43730352 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 447-574
Cow position: chr22:33447881-33448017 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr22:5595611-5595748 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 447-575
Cow position: chr22:12637798-12637663 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr22:25809084-25809214 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 96

Conread position: 447-575
Cow position: chr22:27681921-27681784 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr22:35215748-35215611 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr22:35902224-35902356 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 447-575
Cow position: chr22:40387348-40387215 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 450-573
Cow position: chr22:23675779-23675903 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 75

Conread position: 450-576
Cow position: chr22:14644027-14643898 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 452-562
Cow position: chr22:14142932-14143044 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 452-570
Cow position: chr22:11131061-11130938 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 452-574
Cow position: chr22:14372359-14372234 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 452-574
Cow position: chr22:24583880-24584006 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 75

Conread position: 452-575
Cow position: chr22:1074459-1074327 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr22:11790178-11790046 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 454-575
Cow position: chr22:25247099-25246975 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 458-560
Cow position: chr22:4135779-4135678 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 459-575
Cow position: chr22:4075700-4075823 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 460-573
Cow position: chr22:9597401-9597515 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 65

Conread position: 460-573
Cow position: chr22:13849081-13849190 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 69

Show alignments to all cow chromosomes.