Cow genome map
| Conread name: | Ss1.1-rspl36_h19.5 |
| Conread position: | 422-573 |
| Cow position: | chr27:22150961-22150806 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 433-572 |
| Cow position: | chr27:29399350-29399491 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 434-575 |
| Cow position: | chr27:21101549-21101400 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 109 |
| Conread position: | 437-570 |
| Cow position: | chr27:6541381-6541517 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 437-573 |
| Cow position: | chr27:18215412-18215276 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 437-575 |
| Cow position: | chr27:15315269-15315409 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 438-575 |
| Cow position: | chr27:10979608-10979753 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 439-570 |
| Cow position: | chr27:18435384-18435248 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 439-573 |
| Cow position: | chr27:8790993-8790855 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 439-575 |
| Cow position: | chr27:16965323-16965467 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 439-575 |
| Cow position: | chr27:19932814-19932959 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 441-575 |
| Cow position: | chr27:31248856-31248719 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 442-575 |
| Cow position: | chr27:4414064-4413929 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 442-575 |
| Cow position: | chr27:26400967-26400831 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 442-575 |
| Cow position: | chr27:30441453-30441595 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 442-575 |
| Cow position: | chr27:30914758-30914900 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 443-572 |
| Cow position: | chr27:23774986-23774852 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 444-574 |
| Cow position: | chr27:5539940-5539806 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 445-572 |
| Cow position: | chr27:16512413-16512284 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 445-573 |
| Cow position: | chr27:16705007-16705139 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 445-573 |
| Cow position: | chr27:19991903-19992037 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 445-573 |
| Cow position: | chr27:21951226-21951090 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 445-574 |
| Cow position: | chr27:11145636-11145768 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 101 |
| Conread position: | 445-575 |
| Cow position: | chr27:1779096-1778965 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 445-575 |
| Cow position: | chr27:26118251-26118390 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-573 |
| Cow position: | chr27:6751933-6752069 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:2592292-2592432 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:11208802-11208664 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:15867148-15867280 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:17472569-17472703 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:18873808-18873938 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 446-575 |
| Cow position: | chr27:20048392-20048524 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:26437365-26437231 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:27012451-27012589 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 446-575 |
| Cow position: | chr27:28932047-28931911 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 447-575 |
| Cow position: | chr27:1674539-1674413 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 447-575 |
| Cow position: | chr27:2036482-2036610 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 447-575 |
| Cow position: | chr27:28922139-28922002 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 448-575 |
| Cow position: | chr27:23760221-23760091 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 448-575 |
| Cow position: | chr27:26481440-26481303 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 450-567 |
| Cow position: | chr27:17102659-17102779 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 452-551 |
| Cow position: | chr27:14675411-14675310 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-561 |
| Cow position: | chr27:16505145-16505035 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 452-572 |
| Cow position: | chr27:26112157-26112028 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 452-575 |
| Cow position: | chr27:20484494-20484620 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 452-575 |
| Cow position: | chr27:26467800-26467668 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 452-575 |
| Cow position: | chr27:26983924-26984051 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 452-575 |
| Cow position: | chr27:30444913-30444790 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 452-575 |
| Cow position: | chr27:31157571-31157702 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 453-575 |
| Cow position: | chr27:11982886-11982755 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 453-575 |
| Cow position: | chr27:15865372-15865497 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 453-576 |
| Cow position: | chr27:18791752-18791620 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 456-575 |
| Cow position: | chr27:23554564-23554436 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 458-575 |
| Cow position: | chr27:19557160-19557278 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 458-575 |
| Cow position: | chr27:27450116-27449995 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 459-573 |
| Cow position: | chr27:24693186-24693303 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 460-574 |
| Cow position: | chr27:23177543-23177423 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 460-575 |
| Cow position: | chr27:26909819-26909701 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 462-575 |
| Cow position: | chr27:26226517-26226400 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 96 |
Show alignments to all cow chromosomes.