Cow genome map

Conread name: Ss1.1-rspl36_h19.5

Conread position: 406-571
Cow position: chr4:40995965-40995793 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 96, 30

Conread position: 412-562
Cow position: chr4:45629820-45629974 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 91, 12

Conread position: 413-575
Cow position: chr4:30769257-30769093 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 24

Conread position: 425-575
Cow position: chr4:45212972-45213128 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 129

Conread position: 430-573
Cow position: chr4:42231823-42231963 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 72

Conread position: 430-575
Cow position: chr4:46656343-46656188 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 16

Conread position: 432-573
Cow position: chr4:4320787-4320930 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 12

Conread position: 432-573
Cow position: chr4:22101054-22101204 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 432-573
Cow position: chr4:44024331-44024482 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 432-573
Cow position: chr4:49424993-49424849 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 433-575
Cow position: chr4:19200312-19200171 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 52

Conread position: 433-575
Cow position: chr4:23271488-23271341 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 70, 19

Conread position: 436-573
Cow position: chr4:29384039-29384174 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 129, 9

Conread position: 436-575
Cow position: chr4:348223-348366 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 41

Conread position: 436-575
Cow position: chr4:58018545-58018404 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 67, 32

Conread position: 437-573
Cow position: chr4:22849300-22849431 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 127, 66

Conread position: 437-575
Cow position: chr4:61998995-61999139 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 437-576
Cow position: chr4:46136950-46136808 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 65, 16

Conread position: 439-570
Cow position: chr4:40393012-40392879 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 83

Conread position: 439-570
Cow position: chr4:49338239-49338105 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 439-573
Cow position: chr4:12867300-12867164 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 93

Conread position: 439-573
Cow position: chr4:43909967-43909822 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 439-573
Cow position: chr4:59015780-59015649 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 51

Conread position: 439-574
Cow position: chr4:25802894-25802750 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 439-574
Cow position: chr4:61214658-61214791 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 13

Conread position: 439-575
Cow position: chr4:2713658-2713801 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 14

Conread position: 439-575
Cow position: chr4:13919179-13919036 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 439-575
Cow position: chr4:59785520-59785381 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 440-573
Cow position: chr4:44183920-44184054 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 88

Conread position: 440-575
Cow position: chr4:51867398-51867262 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 125, 0

Conread position: 441-573
Cow position: chr4:19102678-19102821 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 441-575
Cow position: chr4:52823204-52823343 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 442-573
Cow position: chr4:12052140-12052271 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 78

Conread position: 442-573
Cow position: chr4:12676992-12676860 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 101

Conread position: 442-573
Cow position: chr4:22138019-22138160 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 442-573
Cow position: chr4:27276348-27276483 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 40

Conread position: 442-573
Cow position: chr4:39656726-39656589 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-573
Cow position: chr4:42044778-42044914 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 26

Conread position: 442-573
Cow position: chr4:49794847-49794720 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 62, 75

Conread position: 442-573
Cow position: chr4:51617799-51617938 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 124

Conread position: 442-575
Cow position: chr4:8675563-8675427 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 11

Conread position: 442-575
Cow position: chr4:13668421-13668563 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr4:32458659-32458801 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr4:37732282-37732424 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 442-575
Cow position: chr4:38358625-38358766 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 442-575
Cow position: chr4:67393292-67393150 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 443-573
Cow position: chr4:44681065-44681191 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 122, 15

Conread position: 445-564
Cow position: chr4:22546649-22546771 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 445-573
Cow position: chr4:8083614-8083737 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 118, 61

Conread position: 445-573
Cow position: chr4:56410539-56410406 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 445-573
Cow position: chr4:58248599-58248462 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 445-573
Cow position: chr4:66412377-66412247 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 93

Conread position: 445-575
Cow position: chr4:50131716-50131575 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 445-575
Cow position: chr4:63198171-63198313 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 446-571
Cow position: chr4:43436459-43436325 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 446-572
Cow position: chr4:3299605-3299734 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 446-573
Cow position: chr4:9571299-9571165 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 103

Conread position: 446-573
Cow position: chr4:19199090-19199226 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 446-574
Cow position: chr4:6093871-6094008 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 446-575
Cow position: chr4:570981-570851 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 446-575
Cow position: chr4:2774916-2774778 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 446-575
Cow position: chr4:4647593-4647458 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 16

Conread position: 446-575
Cow position: chr4:7698458-7698324 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr4:12245404-12245268 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr4:17790103-17790233 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 42

Conread position: 446-575
Cow position: chr4:21112380-21112514 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 446-575
Cow position: chr4:32693981-32693847 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr4:45685646-45685516 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 446-575
Cow position: chr4:53347788-53347916 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 110
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 118, 84

Conread position: 446-575
Cow position: chr4:56591235-56591096 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 446-575
Cow position: chr4:60761834-60761696 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 446-575
Cow position: chr4:61608775-61608906 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 116
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 31

Conread position: 447-562
Cow position: chr4:47035529-47035652 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 447-571
Cow position: chr4:47038961-47038830 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 447-573
Cow position: chr4:11186159-11186024 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr4:5250383-5250246 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr4:13297571-13297440 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr4:14131616-14131486 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 12

Conread position: 447-575
Cow position: chr4:20124776-20124907 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr4:45076887-45077018 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 447-575
Cow position: chr4:57566502-57566630 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 33

Conread position: 447-575
Cow position: chr4:59873618-59873488 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 103

Conread position: 447-576
Cow position: chr4:36876664-36876801 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 450-573
Cow position: chr4:43579227-43579352 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 18

Conread position: 452-572
Cow position: chr4:50687678-50687804 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 452-573
Cow position: chr4:12127452-12127578 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 452-573
Cow position: chr4:22482507-22482386 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 68

Conread position: 452-573
Cow position: chr4:66168151-66168271 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 63

Conread position: 452-575
Cow position: chr4:9444495-9444628 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 452-575
Cow position: chr4:16513341-16513465 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 6

Conread position: 452-575
Cow position: chr4:19709130-19708998 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 453-571
Cow position: chr4:46234976-46235102 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 458-573
Cow position: chr4:23846873-23846990 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 93

Conread position: 458-573
Cow position: chr4:68590950-68590832 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 459-575
Cow position: chr4:44772859-44772984 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 461-575
Cow position: chr4:22713317-22713435 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 463-575
Cow position: chr4:39092060-39091945 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 479-575
Cow position: chr4:60072587-60072686 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.