Cow genome map

Conread name: Ss1.1-rste17_k4.5

Conread position: 237-866
Cow position: chr13:56333705-56334347 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 396
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 33

Conread position: 241-868
Cow position: chr13:39983977-39984610 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 282-825
Cow position: chr13:39984353-39984903 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 155

Conread position: 292-669
Cow position: chr13:56292154-56291770 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 236
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 6

Conread position: 372-868
Cow position: chr13:39984363-39984862 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 61

Conread position: 395-871
Cow position: chr13:56333782-56334270 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 306
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 84, 392

Conread position: 408-872
Cow position: chr13:39983979-39984446 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 297
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 25

Conread position: 451-891
Cow position: chr13:56333757-56334206 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 281
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 8

Conread position: 481-759
Cow position: chr13:39984643-39984921 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 149, 137

Conread position: 481-873
Cow position: chr13:39984307-39984699 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 198, 203

Conread position: 481-878
Cow position: chr13:39983971-39984368 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 258
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 199, 203

Conread position: 481-896
Cow position: chr13:56333619-56334033 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 257
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 409, 0

Conread position: 491-817
Cow position: chr13:56292117-56291790 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 256, 280

Conread position: 491-830
Cow position: chr13:56333713-56334052 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 491-857
Cow position: chr13:56292700-56292334 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 224
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 118, 182

Conread position: 491-867
Cow position: chr13:56292862-56292492 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 234
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 11

Conread position: 494-866
Cow position: chr13:56333548-56333920 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 228
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 117, 132

Conread position: 495-886
Cow position: chr13:56292194-56291805 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 36

Conread position: 519-875
Cow position: chr13:39983841-39984197 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 226
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 561-785
Cow position: chr13:56317935-56318159 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 562-866
Cow position: chr13:56333532-56333836 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 195
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 148

Conread position: 562-880
Cow position: chr13:56317493-56317805 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 56

Conread position: 638-868
Cow position: chr13:56317928-56318158 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 70

Conread position: 889-1180
Cow position: chr13:39984487-39984778 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 37

Conread position: 889-1180
Cow position: chr13:39984571-39984862 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 45, 37

Conread position: 889-1184
Cow position: chr13:39984403-39984698 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 132, 125

Conread position: 889-1190
Cow position: chr13:39983983-39984284 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 189
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 132, 113

Conread position: 889-1190
Cow position: chr13:39984151-39984452 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 124

Conread position: 889-1200
Cow position: chr13:39984235-39984543 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 44, 39

Conread position: 889-1200
Cow position: chr13:39984319-39984627 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 191
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 298, 0

Conread position: 890-1151
Cow position: chr13:56333632-56333893 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 243, 233

Conread position: 891-1190
Cow position: chr13:39984069-39984368 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 891-1197
Cow position: chr13:56292194-56291891 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 214, 38

Conread position: 892-1187
Cow position: chr13:39983902-39984197 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 915-1190
Cow position: chr13:39983841-39984116 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 175
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 76, 84

Show alignments to all cow chromosomes.