Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 16-934 |
| Cow position: | chr17:22499642-22498703 (view UCSC Genome Browser custom track) |
| Alignm length: | 949 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 284 |
| Conread position: | 233-888 |
| Cow position: | chr17:22553116-22552455 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 20 |
| Conread position: | 393-866 |
| Cow position: | chr17:22473485-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 410 |
| Conread position: | 395-845 |
| Cow position: | chr17:22551943-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 395-853 |
| Cow position: | chr17:22498990-22498530 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 395-865 |
| Cow position: | chr17:22589865-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 62, 228 |
| Conread position: | 395-866 |
| Cow position: | chr17:22552867-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 395-866 |
| Cow position: | chr17:22589949-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 395-867 |
| Cow position: | chr17:22499326-22498851 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 395-867 |
| Cow position: | chr17:22589697-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 395-868 |
| Cow position: | chr17:22499074-22498598 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 395-870 |
| Cow position: | chr17:22452312-22451834 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 395-887 |
| Cow position: | chr17:22452228-22451733 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 312 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 395-887 |
| Cow position: | chr17:22552279-22551784 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 395-888 |
| Cow position: | chr17:22499158-22498662 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 312 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 66, 87 |
| Conread position: | 395-888 |
| Cow position: | chr17:22552027-22551531 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 397-868 |
| Cow position: | chr17:22552697-22552223 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 397-868 |
| Cow position: | chr17:22590199-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 404-879 |
| Cow position: | chr17:22552522-22552044 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 408-888 |
| Cow position: | chr17:22473416-22473899 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 409-832 |
| Cow position: | chr17:22589599-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 409-879 |
| Cow position: | chr17:22552097-22551624 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 409-888 |
| Cow position: | chr17:22552349-22551867 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 409-888 |
| Cow position: | chr17:22590019-22589537 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 298 |
| Conread position: | 455-887 |
| Cow position: | chr17:22552553-22552120 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 464-878 |
| Cow position: | chr17:22452409-22451994 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 307 |
| Conread position: | 468-889 |
| Cow position: | chr17:22452320-22451899 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 478-889 |
| Cow position: | chr17:22590200-22589788 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 8, 118 |
| Conread position: | 481-868 |
| Cow position: | chr17:22473408-22473795 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 223, 234 |
| Conread position: | 481-879 |
| Cow position: | chr17:22590280-22589882 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 128, 145 |
| Conread position: | 485-747 |
| Cow position: | chr17:22451967-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 490-884 |
| Cow position: | chr17:22473333-22473727 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 214, 220 |
| Conread position: | 493-846 |
| Cow position: | chr17:22498807-22498461 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 493-866 |
| Cow position: | chr17:22473174-22473541 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 502-890 |
| Cow position: | chr17:22589671-22589283 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 264, 306 |
| Conread position: | 507-868 |
| Cow position: | chr17:22473266-22473627 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 519-1180 |
| Cow position: | chr17:22452522-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 194 |
| Conread position: | 562-868 |
| Cow position: | chr17:22590283-22589977 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 141, 153 |
| Conread position: | 562-887 |
| Cow position: | chr17:22553117-22552792 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 625-889 |
| Cow position: | chr17:22590304-22590040 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 886-1180 |
| Cow position: | chr17:22590271-22589977 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 226, 212 |
| Conread position: | 888-1180 |
| Cow position: | chr17:22473335-22473627 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 888-1191 |
| Cow position: | chr17:22552263-22551960 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 127, 146 |
| Conread position: | 888-1196 |
| Cow position: | chr17:22473419-22473727 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 212, 224 |
| Conread position: | 889-1073 |
| Cow position: | chr17:22499141-22498957 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1148 |
| Cow position: | chr17:22473672-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 889-1167 |
| Cow position: | chr17:22551758-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 123, 134 |
| Conread position: | 889-1178 |
| Cow position: | chr17:22499309-22499020 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 213, 223 |
| Conread position: | 889-1179 |
| Cow position: | chr17:22552178-22551888 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 889-1179 |
| Cow position: | chr17:22552850-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 223, 211 |
| Conread position: | 889-1179 |
| Cow position: | chr17:22589512-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1180 |
| Cow position: | chr17:22552934-22552643 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 123, 145 |
| Conread position: | 889-1183 |
| Cow position: | chr17:22499393-22499099 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1191 |
| Cow position: | chr17:22552346-22552044 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 889-1191 |
| Cow position: | chr17:22590184-22589882 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1196 |
| Cow position: | chr17:22473174-22473475 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 889-1196 |
| Cow position: | chr17:22473504-22473811 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 59 |
| Conread position: | 889-1196 |
| Cow position: | chr17:22473588-22473895 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1197 |
| Cow position: | chr17:22589596-22589288 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 219, 209 |
| Conread position: | 889-1200 |
| Cow position: | chr17:22551842-22551531 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1200 |
| Cow position: | chr17:22590100-22589789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1206 |
| Cow position: | chr17:22553102-22552785 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 133, 113 |
| Conread position: | 889-1207 |
| Cow position: | chr17:22498973-22498655 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 224, 231 |
| Conread position: | 889-1207 |
| Cow position: | chr17:22552010-22551692 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 133, 119 |
| Conread position: | 889-1207 |
| Cow position: | chr17:22552430-22552112 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 148, 143 |
| Conread position: | 889-1207 |
| Cow position: | chr17:22552682-22552364 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 134 |
| Conread position: | 889-1218 |
| Cow position: | chr17:22452295-22451966 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 889-1236 |
| Cow position: | chr17:22552766-22552416 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 148, 143 |
| Conread position: | 890-1178 |
| Cow position: | chr17:22499224-22498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 212, 221 |
| Conread position: | 890-1181 |
| Cow position: | chr17:22499056-22498765 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 891-1180 |
| Cow position: | chr17:22452041-22451752 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 221, 206 |
| Conread position: | 891-1180 |
| Cow position: | chr17:22589846-22589557 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 891-1180 |
| Cow position: | chr17:22590014-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 216, 205 |
| Conread position: | 891-1236 |
| Cow position: | chr17:22589930-22589582 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 892-1156 |
| Cow position: | chr17:22498803-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 221 |
| Conread position: | 892-1196 |
| Cow position: | chr17:22589677-22589373 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 895-1180 |
| Cow position: | chr17:22498883-22498598 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 899-1178 |
| Cow position: | chr17:22473262-22473541 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1200 |
| Cow position: | chr17:22452412-22452152 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 164, 172 |
Show alignments to all cow chromosomes.