Cow genome map

Conread name: Ss1.1-rste17_k4.5

Conread position: 16-934
Cow position:
Alignm length: 949
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 284

Conread position: 233-888
Cow position:
Alignm length: 665
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 20

Conread position: 393-866
Cow position:
Alignm length: 479
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 410

Conread position: 395-845
Cow position:
Alignm length: 457
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 395-853
Cow position:
Alignm length: 465
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 395-865
Cow position:
Alignm length: 476
Alignm identity: 299
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 62, 228

Conread position: 395-866
Cow position:
Alignm length: 477
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 37

Conread position: 395-866
Cow position:
Alignm length: 478
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 395-867
Cow position:
Alignm length: 478
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 40

Conread position: 395-867
Cow position:
Alignm length: 479
Alignm identity: 305
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 87

Conread position: 395-868
Cow position:
Alignm length: 482
Alignm identity: 302
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 28, 36

Conread position: 395-870
Cow position:
Alignm length: 483
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 46

Conread position: 395-887
Cow position:
Alignm length: 498
Alignm identity: 312
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 28, 38

Conread position: 395-887
Cow position:
Alignm length: 497
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 171

Conread position: 395-888
Cow position:
Alignm length: 499
Alignm identity: 312
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 66, 87

Conread position: 395-888
Cow position:
Alignm length: 503
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 397-868
Cow position:
Alignm length: 478
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 34

Conread position: 397-868
Cow position:
Alignm length: 479
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 85

Conread position: 404-879
Cow position:
Alignm length: 482
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 27

Conread position: 408-888
Cow position:
Alignm length: 487
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 25

Conread position: 409-832
Cow position:
Alignm length: 431
Alignm identity: 271
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 22

Conread position: 409-879
Cow position:
Alignm length: 476
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 409-888
Cow position:
Alignm length: 486
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 409-888
Cow position:
Alignm length: 484
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 298

Conread position: 455-887
Cow position:
Alignm length: 438
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 141

Conread position: 464-878
Cow position:
Alignm length: 417
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 307

Conread position: 468-889
Cow position:
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 478-889
Cow position:
Alignm length: 416
Alignm identity: 268
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 8, 118

Conread position: 481-868
Cow position:
Alignm length: 390
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 223, 234

Conread position: 481-879
Cow position:
Alignm length: 404
Alignm identity: 266
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 128, 145

Conread position: 485-747
Cow position:
Alignm length: 268
Alignm identity: 178
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 125, 140

Conread position: 490-884
Cow position:
Alignm length: 399
Alignm identity: 262
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 214, 220

Conread position: 493-846
Cow position:
Alignm length: 357
Alignm identity: 239
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 15, 38

Conread position: 493-866
Cow position:
Alignm length: 374
Alignm identity: 240
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 0

Conread position: 502-890
Cow position:
Alignm length: 392
Alignm identity: 256
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 264, 306

Conread position: 507-868
Cow position:
Alignm length: 364
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 22

Conread position: 519-1180
Cow position:
Alignm length: 690
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 194

Conread position: 562-868
Cow position:
Alignm length: 310
Alignm identity: 197
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 141, 153

Conread position: 562-887
Cow position:
Alignm length: 326
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 625-889
Cow position:
Alignm length: 266
Alignm identity: 169
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 154, 148

Conread position: 886-1180
Cow position:
Alignm length: 296
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 226, 212

Conread position: 888-1180
Cow position:
Alignm length: 293
Alignm identity: 186
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 888-1191
Cow position:
Alignm length: 307
Alignm identity: 201
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 127, 146

Conread position: 888-1196
Cow position:
Alignm length: 310
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 212, 224

Conread position: 889-1073
Cow position:
Alignm length: 185
Alignm identity: 135
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1148
Cow position:
Alignm length: 261
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 252, 0

Conread position: 889-1167
Cow position:
Alignm length: 280
Alignm identity: 177
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 123, 134

Conread position: 889-1178
Cow position:
Alignm length: 291
Alignm identity: 193
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 213, 223

Conread position: 889-1179
Cow position:
Alignm length: 292
Alignm identity: 193
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 50

Conread position: 889-1179
Cow position:
Alignm length: 292
Alignm identity: 189
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 223, 211

Conread position: 889-1179
Cow position:
Alignm length: 291
Alignm identity: 188
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1180
Cow position:
Alignm length: 294
Alignm identity: 187
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 123, 145

Conread position: 889-1183
Cow position:
Alignm length: 295
Alignm identity: 188
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1191
Cow position:
Alignm length: 304
Alignm identity: 195
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 232, 227

Conread position: 889-1191
Cow position:
Alignm length: 303
Alignm identity: 192
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1196
Cow position:
Alignm length: 311
Alignm identity: 204
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 28

Conread position: 889-1196
Cow position:
Alignm length: 309
Alignm identity: 197
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 63, 59

Conread position: 889-1196
Cow position:
Alignm length: 308
Alignm identity: 211
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1197
Cow position:
Alignm length: 310
Alignm identity: 194
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 219, 209

Conread position: 889-1200
Cow position:
Alignm length: 312
Alignm identity: 201
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1200
Cow position:
Alignm length: 312
Alignm identity: 197
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1206
Cow position:
Alignm length: 319
Alignm identity: 197
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 113

Conread position: 889-1207
Cow position:
Alignm length: 320
Alignm identity: 213
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 224, 231

Conread position: 889-1207
Cow position:
Alignm length: 320
Alignm identity: 210
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 133, 119

Conread position: 889-1207
Cow position:
Alignm length: 321
Alignm identity: 207
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 148, 143

Conread position: 889-1207
Cow position:
Alignm length: 320
Alignm identity: 205
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 123, 134

Conread position: 889-1218
Cow position:
Alignm length: 334
Alignm identity: 211
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 33

Conread position: 889-1236
Cow position:
Alignm length: 352
Alignm identity: 232
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 148, 143

Conread position: 890-1178
Cow position:
Alignm length: 290
Alignm identity: 180
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 212, 221

Conread position: 890-1181
Cow position:
Alignm length: 294
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 120, 112

Conread position: 891-1180
Cow position:
Alignm length: 292
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 221, 206

Conread position: 891-1180
Cow position:
Alignm length: 290
Alignm identity: 182
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 891-1180
Cow position:
Alignm length: 291
Alignm identity: 190
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 216, 205

Conread position: 891-1236
Cow position:
Alignm length: 349
Alignm identity: 221
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 329, 0

Conread position: 892-1156
Cow position:
Alignm length: 267
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 221

Conread position: 892-1196
Cow position:
Alignm length: 307
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 108

Conread position: 895-1180
Cow position:
Alignm length: 286
Alignm identity: 186
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 899-1178
Cow position:
Alignm length: 280
Alignm identity: 181
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 940-1200
Cow position:
Alignm length: 262
Alignm identity: 167
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 164, 172

Show alignments to all cow chromosomes.