Cow genome map

Conread name: Ss1.1-rste17_k4.5

Conread position: 220-669
Cow position: chr23:25626590-25627044 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 279
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 14

Conread position: 229-836
Cow position: chr23:25660134-25660747 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 371
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 71, 58

Conread position: 300-1196
Cow position: chr23:25626000-25626923 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 60

Conread position: 387-872
Cow position: chr23:24522673-24522188 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 48

Conread position: 393-867
Cow position: chr23:24547180-24546703 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 89

Conread position: 395-669
Cow position: chr23:24560402-24560125 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 395-725
Cow position: chr23:24522500-24522167 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 41

Conread position: 395-749
Cow position: chr23:24535809-24535452 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 221
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 28

Conread position: 395-847
Cow position: chr23:24639620-24640075 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 376

Conread position: 395-866
Cow position: chr23:24547094-24546621 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 38

Conread position: 395-878
Cow position: chr23:25698588-25698102 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 308
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 83, 145

Conread position: 395-888
Cow position: chr23:24547262-24546766 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 395-888
Cow position: chr23:24560654-24560158 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 395-888
Cow position: chr23:25660219-25660715 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 396-879
Cow position: chr23:24535976-24535490 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 101

Conread position: 397-867
Cow position: chr23:24639454-24639927 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 374

Conread position: 434-888
Cow position: chr23:25626557-25627011 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 7

Conread position: 435-750
Cow position: chr23:25626721-25627041 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 105

Conread position: 444-846
Cow position: chr23:24626341-24626744 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 448-879
Cow position: chr23:24639337-24639771 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 279
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 41, 37

Conread position: 481-870
Cow position: chr23:24639208-24639595 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 248
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 209, 10

Conread position: 489-868
Cow position: chr23:25698659-25698280 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 235
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 54, 48

Conread position: 491-760
Cow position: chr23:24654116-24654385 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 177
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 212, 219

Conread position: 491-872
Cow position: chr23:25660150-25660531 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 251
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 212, 225

Conread position: 491-887
Cow position: chr23:24639299-24639695 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 82, 90

Conread position: 491-905
Cow position: chr23:24639467-24639879 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 5

Conread position: 492-890
Cow position: chr23:24536047-24535647 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 492-929
Cow position: chr23:24560890-24560457 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 0

Conread position: 493-750
Cow position: chr23:24560385-24560128 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 493-844
Cow position: chr23:25724042-25723692 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 233
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 39, 69

Conread position: 493-879
Cow position: chr23:24626309-24626695 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 45

Conread position: 493-889
Cow position: chr23:24560805-24560409 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 256
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 361, 355

Conread position: 493-889
Cow position: chr23:24639635-24640033 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 277

Conread position: 494-855
Cow position: chr23:24654034-24654396 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 8, 275

Conread position: 494-887
Cow position: chr23:24522129-24521750 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 249
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 271, 8

Conread position: 502-887
Cow position: chr23:24547320-24546935 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 269

Conread position: 513-866
Cow position: chr23:25724106-25723753 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 30, 10

Conread position: 516-868
Cow position: chr23:24626251-24626600 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 10

Conread position: 560-888
Cow position: chr23:24560906-24560578 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 204
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 294, 287

Conread position: 571-866
Cow position: chr23:25660146-25660441 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 217, 227

Conread position: 571-902
Cow position: chr23:24536050-24535720 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 207
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 193, 199

Conread position: 572-1179
Cow position: chr23:24547334-24546703 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 112

Conread position: 575-872
Cow position: chr23:25698657-25698360 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 51

Conread position: 575-887
Cow position: chr23:24522569-24522257 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 136, 131

Conread position: 577-891
Cow position: chr23:24522814-24522505 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 199
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 244, 27

Conread position: 592-888
Cow position: chr23:24639232-24639528 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 193
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 149, 157

Conread position: 592-890
Cow position: chr23:25724111-25723813 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 172, 178

Conread position: 630-887
Cow position: chr23:24626278-24626535 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 134, 146

Conread position: 653-891
Cow position: chr23:24654024-24654264 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 11, 119

Conread position: 654-875
Cow position: chr23:25660145-25660366 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 110, 116

Conread position: 793-1184
Cow position: chr23:25698760-25698360 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 249
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 69, 321

Conread position: 871-1095
Cow position: chr23:24654097-24654324 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 20, 55

Conread position: 889-1080
Cow position: chr23:24626561-24626750 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 130

Conread position: 889-1157
Cow position: chr23:24626477-24626743 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 214, 223

Conread position: 889-1178
Cow position: chr23:24522567-24522278 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 126, 134

Conread position: 889-1178
Cow position: chr23:24639301-24639590 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 184
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 46

Conread position: 889-1179
Cow position: chr23:25698487-25698197 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 182
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 126, 137

Conread position: 889-1180
Cow position: chr23:24560553-24560262 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1180
Cow position: chr23:24626309-24626600 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1184
Cow position: chr23:24522483-24522188 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 48

Conread position: 889-1184
Cow position: chr23:25660236-25660531 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 189
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 154, 119

Conread position: 889-1185
Cow position: chr23:25660404-25660700 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 126, 130

Conread position: 889-1191
Cow position: chr23:24535960-24535658 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1191
Cow position: chr23:24547329-24547027 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 44, 30

Conread position: 889-1191
Cow position: chr23:24626393-24626695 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 223

Conread position: 889-1196
Cow position: chr23:24522814-24522512 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 195
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 219, 24

Conread position: 889-1196
Cow position: chr23:24547077-24546770 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 200
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 46, 42

Conread position: 889-1196
Cow position: chr23:24547245-24546938 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 198
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 42

Conread position: 889-1196
Cow position: chr23:24639553-24639860 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 197
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 214, 223

Conread position: 889-1199
Cow position: chr23:24639637-24639947 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 193
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 42, 46

Conread position: 889-1199
Cow position: chr23:25724042-25723732 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 193
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 214, 223

Conread position: 889-1205
Cow position: chr23:25660320-25660633 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 291, 0

Conread position: 889-1207
Cow position: chr23:24560469-24560151 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1207
Cow position: chr23:24560805-24560487 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 199
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1207
Cow position: chr23:25626199-25626517 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 195
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 889-1217
Cow position: chr23:25626700-25627028 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 203
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 47, 36

Conread position: 890-1191
Cow position: chr23:24522647-24522349 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 75, 37

Conread position: 890-1191
Cow position: chr23:24535791-24535490 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 194
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 125, 133

Conread position: 892-1180
Cow position: chr23:24560718-24560430 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 183
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 131

Conread position: 898-1179
Cow position: chr23:24535867-24535586 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 102

Conread position: 909-1207
Cow position: chr23:25724106-25723808 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 189
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 13

Show alignments to all cow chromosomes.