Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 231-887 |
| Cow position: | chr24:17078362-17077699 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 240-845 |
| Cow position: | chr24:17035965-17035354 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 308-888 |
| Cow position: | chr24:17036233-17035647 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 383-868 |
| Cow position: | chr24:17035567-17035079 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 314 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 383-884 |
| Cow position: | chr24:17035735-17035231 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 383-888 |
| Cow position: | chr24:17036407-17035899 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 394-835 |
| Cow position: | chr24:17035470-17035028 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 395-687 |
| Cow position: | chr24:17013231-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 395-767 |
| Cow position: | chr24:17035303-17034929 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 241 |
| Conread position: | 395-868 |
| Cow position: | chr24:17078110-17077634 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 395-878 |
| Cow position: | chr24:17035891-17035405 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 395-879 |
| Cow position: | chr24:17078278-17077791 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 395-887 |
| Cow position: | chr24:17070526-17071021 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 396-841 |
| Cow position: | chr24:17070611-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 397-844 |
| Cow position: | chr24:17077940-17077491 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 98, 444 |
| Conread position: | 400-886 |
| Cow position: | chr24:17078021-17077532 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 411-890 |
| Cow position: | chr24:17070374-17070856 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 438-886 |
| Cow position: | chr24:17070483-17070936 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 444-634 |
| Cow position: | chr24:16986462-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 479-888 |
| Cow position: | chr24:17036477-17036067 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 7, 369 |
| Conread position: | 491-845 |
| Cow position: | chr24:17035960-17035606 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 279 |
| Conread position: | 491-846 |
| Cow position: | chr24:17013162-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 491-888 |
| Cow position: | chr24:17035540-17035143 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 298, 302 |
| Conread position: | 493-718 |
| Cow position: | chr24:16986428-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 493-878 |
| Cow position: | chr24:17036546-17036161 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 496-846 |
| Cow position: | chr24:17035284-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 209 |
| Conread position: | 556-888 |
| Cow position: | chr24:17078282-17077950 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 561-884 |
| Cow position: | chr24:17013148-17013471 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 143, 155 |
| Conread position: | 571-887 |
| Cow position: | chr24:17070369-17070685 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 575-787 |
| Cow position: | chr24:16986428-16986640 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 135 |
| Conread position: | 592-888 |
| Cow position: | chr24:17036612-17036319 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 659-1062 |
| Cow position: | chr24:16986428-16986823 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 356, 222 |
| Conread position: | 880-1196 |
| Cow position: | chr24:17070449-17070766 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 226 |
| Conread position: | 888-1180 |
| Cow position: | chr24:17036127-17035835 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 127, 131 |
| Conread position: | 888-1180 |
| Cow position: | chr24:17077926-17077634 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 126, 131 |
| Conread position: | 888-1190 |
| Cow position: | chr24:17035707-17035405 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 888-1191 |
| Cow position: | chr24:17078010-17077707 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 149, 144 |
| Conread position: | 888-1197 |
| Cow position: | chr24:17070626-17070935 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 210, 224 |
| Conread position: | 888-1207 |
| Cow position: | chr24:17036379-17036060 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 889-1093 |
| Cow position: | chr24:17013248-17013452 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 889-1147 |
| Cow position: | chr24:17070795-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1151 |
| Cow position: | chr24:17036042-17035780 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 134 |
| Conread position: | 889-1173 |
| Cow position: | chr24:17036546-17036262 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 889-1180 |
| Cow position: | chr24:17070543-17070834 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 889-1190 |
| Cow position: | chr24:17036462-17036161 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 126, 134 |
| Conread position: | 889-1191 |
| Cow position: | chr24:17035622-17035320 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 121 |
| Conread position: | 889-1191 |
| Cow position: | chr24:17035958-17035656 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 212, 223 |
| Conread position: | 889-1191 |
| Cow position: | chr24:17070711-17071013 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 889-1191 |
| Cow position: | chr24:17077843-17077539 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 7, 145 |
| Conread position: | 889-1196 |
| Cow position: | chr24:17035538-17035231 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 134 |
| Conread position: | 889-1196 |
| Cow position: | chr24:17036210-17035903 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 889-1200 |
| Cow position: | chr24:17077757-17077450 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 213, 223 |
| Conread position: | 889-1200 |
| Cow position: | chr24:17078261-17077950 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1207 |
| Cow position: | chr24:17035790-17035472 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 890-1207 |
| Cow position: | chr24:17013165-17013482 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 901-1180 |
| Cow position: | chr24:17070387-17070666 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 904-1207 |
| Cow position: | chr24:17036612-17036312 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 200, 63 |
| Conread position: | 913-1191 |
| Cow position: | chr24:17078153-17077875 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 61 |
Show alignments to all cow chromosomes.