Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 229-878 |
| Cow position: | chr28:34695895-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 397 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 237-866 |
| Cow position: | chr28:9299057-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 380 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 222, 123 |
| Conread position: | 244-889 |
| Cow position: | chr28:9252766-9253415 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 308-889 |
| Cow position: | chr28:7810325-7810903 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 363 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 341-889 |
| Cow position: | chr28:11334127-11333573 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 383-889 |
| Cow position: | chr28:11334166-11333657 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 395-859 |
| Cow position: | chr28:9290237-9290698 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 5 |
| Conread position: | 395-1173 |
| Cow position: | chr28:7757819-7758608 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 405-879 |
| Cow position: | chr28:34679565-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 409-669 |
| Cow position: | chr28:9253352-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 409-874 |
| Cow position: | chr28:9290169-9290631 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 409-884 |
| Cow position: | chr28:7757413-7757891 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 409-886 |
| Cow position: | chr28:9253100-9253580 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 413-866 |
| Cow position: | chr28:7757585-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 434-750 |
| Cow position: | chr28:7758514-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 263 |
| Conread position: | 444-860 |
| Cow position: | chr28:9298600-9299015 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 447-802 |
| Cow position: | chr28:33210263-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 327 |
| Conread position: | 455-886 |
| Cow position: | chr28:7757545-7757977 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 240 |
| Conread position: | 464-867 |
| Cow position: | chr28:7757386-7757790 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 307 |
| Conread position: | 474-853 |
| Cow position: | chr28:7810572-7810950 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 290, 296 |
| Conread position: | 481-1197 |
| Cow position: | chr28:7757824-7758548 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 244 |
| Conread position: | 482-1180 |
| Cow position: | chr28:9289829-9290541 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 439 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 485-781 |
| Cow position: | chr28:11333641-11333350 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 277, 175 |
| Conread position: | 488-845 |
| Cow position: | chr28:7758402-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 491-750 |
| Cow position: | chr28:9253353-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 491-866 |
| Cow position: | chr28:9289999-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 491-1173 |
| Cow position: | chr28:7758086-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 130 |
| Conread position: | 493-861 |
| Cow position: | chr28:11333885-11333515 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 493-873 |
| Cow position: | chr28:9253271-9253652 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 493-999 |
| Cow position: | chr28:34679560-34679040 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 494-763 |
| Cow position: | chr28:7810674-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 495-886 |
| Cow position: | chr28:7757334-7757725 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 495-1191 |
| Cow position: | chr28:7758006-7758710 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 291 |
| Conread position: | 496-884 |
| Cow position: | chr28:7757755-7758143 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 295 |
| Conread position: | 496-886 |
| Cow position: | chr28:33210230-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 273 |
| Conread position: | 502-1178 |
| Cow position: | chr28:9298826-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 169 |
| Conread position: | 513-867 |
| Cow position: | chr28:7810284-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 529-890 |
| Cow position: | chr28:34679607-34679244 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 539-891 |
| Cow position: | chr28:9290134-9290480 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 161, 85 |
| Conread position: | 586-889 |
| Cow position: | chr28:11334212-11333909 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 596-1207 |
| Cow position: | chr28:7810283-7810909 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 175 |
| Conread position: | 870-1196 |
| Cow position: | chr28:7757565-7757891 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 889-1149 |
| Cow position: | chr28:9253355-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 889-1178 |
| Cow position: | chr28:11333885-11333596 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1179 |
| Cow position: | chr28:7757500-7757790 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1179 |
| Cow position: | chr28:9253103-9253393 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1179 |
| Cow position: | chr28:9290419-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 889-1184 |
| Cow position: | chr28:9290336-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 215, 40 |
| Conread position: | 889-1191 |
| Cow position: | chr28:7757416-7757718 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 889-1191 |
| Cow position: | chr28:7757668-7757970 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 889-1191 |
| Cow position: | chr28:9253271-9253573 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1191 |
| Cow position: | chr28:9298652-9298951 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 889-1191 |
| Cow position: | chr28:34679394-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 217 |
| Conread position: | 889-1197 |
| Cow position: | chr28:9253187-9253495 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 891-1197 |
| Cow position: | chr28:7757334-7757640 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 892-1178 |
| Cow position: | chr28:7757755-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 892-1196 |
| Cow position: | chr28:9253023-9253326 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 123, 8 |
Show alignments to all cow chromosomes.