Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 221-1174 |
| Cow position: | chr3:62742421-62743377 (view UCSC Genome Browser custom track) |
| Alignm length: | 977 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 233-884 |
| Cow position: | chr3:68045671-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 233-888 |
| Cow position: | chr3:68027078-68027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 270-868 |
| Cow position: | chr3:77351301-77350705 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 301-833 |
| Cow position: | chr3:62742916-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 403, 100 |
| Conread position: | 383-846 |
| Cow position: | chr3:77351102-77350646 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 383-888 |
| Cow position: | chr3:62722186-62721678 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 395-888 |
| Cow position: | chr3:62722090-62721594 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 396-884 |
| Cow position: | chr3:62722257-62721766 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 404-830 |
| Cow position: | chr3:62721997-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 378 |
| Conread position: | 410-835 |
| Cow position: | chr3:68027342-68027768 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 131 |
| Conread position: | 411-890 |
| Cow position: | chr3:62722326-62721844 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 444-838 |
| Cow position: | chr3:62743124-62743520 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 187 |
| Conread position: | 446-746 |
| Cow position: | chr3:68046055-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 284 |
| Conread position: | 454-939 |
| Cow position: | chr3:68045561-68046044 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 479-866 |
| Cow position: | chr3:62742348-62742732 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 480-866 |
| Cow position: | chr3:68026995-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 485-1180 |
| Cow position: | chr3:62742606-62743299 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 35 |
| Conread position: | 485-1192 |
| Cow position: | chr3:62742271-62742997 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 497-1054 |
| Cow position: | chr3:16020758-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 504-891 |
| Cow position: | chr3:62722314-62721927 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 267 |
| Conread position: | 563-875 |
| Cow position: | chr3:68026995-68027306 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 567-1180 |
| Cow position: | chr3:62742269-62742901 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 406 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 636-880 |
| Cow position: | chr3:62742254-62742497 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 884-1193 |
| Cow position: | chr3:68027339-68027648 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 127, 116 |
| Conread position: | 888-1178 |
| Cow position: | chr3:68045684-68045974 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 215, 224 |
| Conread position: | 888-1201 |
| Cow position: | chr3:68027427-68027740 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 889-1096 |
| Cow position: | chr3:68027512-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1178 |
| Cow position: | chr3:68027092-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1187 |
| Cow position: | chr3:68027176-68027474 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 138, 126 |
| Conread position: | 889-1187 |
| Cow position: | chr3:68027260-68027558 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 889-1188 |
| Cow position: | chr3:68045853-68046152 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 889-1193 |
| Cow position: | chr3:68045937-68046241 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 223, 214 |
| Conread position: | 889-1194 |
| Cow position: | chr3:62722241-62721936 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 224, 212 |
| Conread position: | 889-1196 |
| Cow position: | chr3:62722073-62721766 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1196 |
| Cow position: | chr3:68046021-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 126, 135 |
| Conread position: | 889-1207 |
| Cow position: | chr3:62722157-62721839 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1227 |
| Cow position: | chr3:62721905-62721565 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 320, 0 |
| Conread position: | 891-1178 |
| Cow position: | chr3:62722323-62722036 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1180 |
| Cow position: | chr3:68045605-68045892 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 892-1187 |
| Cow position: | chr3:68027012-68027306 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 893-1218 |
| Cow position: | chr3:62742283-62742607 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 912-1194 |
| Cow position: | chr3:68026947-68027229 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 933-1178 |
| Cow position: | chr3:62722365-62722120 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 27 |
Show alignments to all cow chromosomes.