Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 17-878 |
| Cow position: | chr6:49339685-49340537 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 511 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 140, 131 |
| Conread position: | 235-884 |
| Cow position: | chr6:49396280-49396936 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 380 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 6, 53 |
| Conread position: | 387-875 |
| Cow position: | chr6:49340381-49340870 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 395-868 |
| Cow position: | chr6:49340471-49340947 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 395-868 |
| Cow position: | chr6:49396276-49396752 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 90, 456 |
| Conread position: | 395-875 |
| Cow position: | chr6:49340639-49341122 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 395-878 |
| Cow position: | chr6:49340891-49341377 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 404-878 |
| Cow position: | chr6:49340564-49341041 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 404-880 |
| Cow position: | chr6:49340732-49341211 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 408-884 |
| Cow position: | chr6:49340988-49341465 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 447-879 |
| Cow position: | chr6:49396166-49396595 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 489-884 |
| Cow position: | chr6:49396127-49396516 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 491-872 |
| Cow position: | chr6:49396627-49397009 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 363, 357 |
| Conread position: | 491-879 |
| Cow position: | chr6:49396459-49396847 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 232, 215 |
| Conread position: | 493-878 |
| Cow position: | chr6:49396293-49396678 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-884 |
| Cow position: | chr6:49429152-49429541 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 144 |
| Conread position: | 541-875 |
| Cow position: | chr6:49340368-49340702 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 175, 171 |
| Conread position: | 618-875 |
| Cow position: | chr6:49340361-49340618 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 94 |
| Conread position: | 889-1180 |
| Cow position: | chr6:49340656-49340947 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 125, 137 |
| Conread position: | 889-1180 |
| Cow position: | chr6:49340740-49341031 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 889-1180 |
| Cow position: | chr6:49340992-49341283 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1187 |
| Cow position: | chr6:49340404-49340702 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 214, 223 |
| Conread position: | 889-1187 |
| Cow position: | chr6:49340488-49340786 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1187 |
| Cow position: | chr6:49340572-49340870 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 889-1187 |
| Cow position: | chr6:49340824-49341122 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 223, 212 |
| Conread position: | 889-1190 |
| Cow position: | chr6:49341076-49341377 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 889-1192 |
| Cow position: | chr6:49340908-49341211 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 889-1196 |
| Cow position: | chr6:49341160-49341465 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 272, 0 |
Show alignments to all cow chromosomes.