Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 229-882 |
| Cow position: | chr8:48407311-48406651 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 403 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 233-824 |
| Cow position: | chr8:45201340-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 51 |
| Conread position: | 233-861 |
| Cow position: | chr8:45201508-45202134 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 376 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 233-879 |
| Cow position: | chr8:45201256-45201908 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 233-886 |
| Cow position: | chr8:45201172-45201831 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 233-890 |
| Cow position: | chr8:48407224-48406561 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 402 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 485 |
| Conread position: | 233-891 |
| Cow position: | chr8:48407476-48406812 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 558 |
| Conread position: | 233-893 |
| Cow position: | chr8:55581144-55581810 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 398 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 233-1196 |
| Cow position: | chr8:46816283-46817276 (view UCSC Genome Browser custom track) |
| Alignm length: | 997 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 544 |
| Conread position: | 234-831 |
| Cow position: | chr8:46816788-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 241-868 |
| Cow position: | chr8:46815868-46816504 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 379-887 |
| Cow position: | chr8:48407580-48407068 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 410 |
| Conread position: | 383-888 |
| Cow position: | chr8:46816184-46816692 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 385-868 |
| Cow position: | chr8:55580796-55581281 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 395-866 |
| Cow position: | chr8:46816868-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 141 |
| Conread position: | 396-888 |
| Cow position: | chr8:55580890-55581385 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 149 |
| Conread position: | 406-1097 |
| Cow position: | chr8:55580984-55581702 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 409-843 |
| Cow position: | chr8:48406707-48406272 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 413-866 |
| Cow position: | chr8:45201019-45201475 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 424-888 |
| Cow position: | chr8:46815886-46816356 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 434-929 |
| Cow position: | chr8:46816151-46816645 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 444-834 |
| Cow position: | chr8:6958048-6957657 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 259 |
| Conread position: | 444-866 |
| Cow position: | chr8:48406842-48406417 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 448-887 |
| Cow position: | chr8:45200802-45201244 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 454-888 |
| Cow position: | chr8:46816005-46816440 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 454-888 |
| Cow position: | chr8:46816845-46817280 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 455-767 |
| Cow position: | chr8:45201651-45201965 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 481-884 |
| Cow position: | chr8:55580810-55581213 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 491-1194 |
| Cow position: | chr8:48407380-48406651 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 280 |
| Conread position: | 492-890 |
| Cow position: | chr8:48407631-48407233 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-891 |
| Cow position: | chr8:55580736-55581136 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 493-879 |
| Cow position: | chr8:45201018-45201404 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 133 |
| Conread position: | 495-879 |
| Cow position: | chr8:45200936-45201320 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 496-846 |
| Cow position: | chr8:48406704-48406353 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 514-861 |
| Cow position: | chr8:6958059-6957713 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 250, 285 |
| Conread position: | 567-1206 |
| Cow position: | chr8:46815540-46816194 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 405 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 569-846 |
| Cow position: | chr8:48407638-48407361 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 682-866 |
| Cow position: | chr8:6958059-6957875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 888-1196 |
| Cow position: | chr8:45201353-45201661 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 888-1207 |
| Cow position: | chr8:48407295-48406976 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1097 |
| Cow position: | chr8:6957996-6957788 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1157 |
| Cow position: | chr8:48407630-48407362 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 214, 221 |
| Conread position: | 889-1178 |
| Cow position: | chr8:45201186-45201475 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 59 |
| Conread position: | 889-1178 |
| Cow position: | chr8:46817053-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 889-1180 |
| Cow position: | chr8:55580990-55581281 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1180 |
| Cow position: | chr8:55581410-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 889-1181 |
| Cow position: | chr8:46816213-46816505 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 889-1182 |
| Cow position: | chr8:55581158-55581451 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 889-1191 |
| Cow position: | chr8:45201018-45201320 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 213, 222 |
| Conread position: | 889-1191 |
| Cow position: | chr8:45201102-45201404 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 889-1191 |
| Cow position: | chr8:45201606-45201908 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 889-1191 |
| Cow position: | chr8:48407546-48407244 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 217, 228 |
| Conread position: | 889-1191 |
| Cow position: | chr8:55581326-55581628 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 889-1196 |
| Cow position: | chr8:48407126-48406819 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 215, 223 |
| Conread position: | 889-1197 |
| Cow position: | chr8:55581242-55581550 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 216, 208 |
| Conread position: | 889-1200 |
| Cow position: | chr8:46816717-46817028 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 112 |
| Conread position: | 889-1203 |
| Cow position: | chr8:46816549-46816863 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 889-1206 |
| Cow position: | chr8:46816381-46816698 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 889-1207 |
| Cow position: | chr8:46816129-46816447 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 219, 213 |
| Conread position: | 889-1207 |
| Cow position: | chr8:46816633-46816951 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 889-1207 |
| Cow position: | chr8:46816885-46817203 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 128, 124 |
| Conread position: | 890-1200 |
| Cow position: | chr8:46816046-46816356 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 891-1197 |
| Cow position: | chr8:45200936-45201242 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 207, 216 |
| Conread position: | 892-1198 |
| Cow position: | chr8:46815964-46816270 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 121, 115 |
| Conread position: | 895-1178 |
| Cow position: | chr8:48407456-48407173 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 902-1196 |
| Cow position: | chr8:55580835-55581129 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.