Cow genome map
| Conread name: | Ss1.1-rste17_k4.5 |
| Conread position: | 233-868 |
| Cow position: | chrX:25325097-25324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 492 |
| Conread position: | 233-889 |
| Cow position: | chrX:25325433-25324771 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 105 |
| Conread position: | 255-844 |
| Cow position: | chrX:29045252-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 179 |
| Conread position: | 293-879 |
| Cow position: | chrX:25325709-25325117 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 251 |
| Conread position: | 378-845 |
| Cow position: | chrX:25325873-25325403 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 383-1207 |
| Cow position: | chrX:29045772-29044942 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 170 |
| Conread position: | 393-860 |
| Cow position: | chrX:25309789-25310257 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 395-888 |
| Cow position: | chrX:25324764-25324268 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 395-936 |
| Cow position: | chrX:25325184-25324643 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 397-771 |
| Cow position: | chrX:25310211-25310587 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 95, 233 |
| Conread position: | 397-839 |
| Cow position: | chrX:25324678-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 397-879 |
| Cow position: | chrX:25325098-25324613 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 377 |
| Conread position: | 400-867 |
| Cow position: | chrX:13826876-13826406 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 401-1207 |
| Cow position: | chrX:29045837-29045026 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 404-763 |
| Cow position: | chrX:29045016-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 404-872 |
| Cow position: | chrX:25324839-25324368 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 404-886 |
| Cow position: | chrX:25325763-25325278 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 404-889 |
| Cow position: | chrX:29045268-29044780 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 194 |
| Conread position: | 404-1197 |
| Cow position: | chrX:25325343-25324523 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 434-887 |
| Cow position: | chrX:25324977-25324521 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 282 |
| Conread position: | 448-936 |
| Cow position: | chrX:25310012-25310498 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 256 |
| Conread position: | 455-888 |
| Cow position: | chrX:29045131-29044697 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 462-868 |
| Cow position: | chrX:25310108-25310517 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 160 |
| Conread position: | 467-888 |
| Cow position: | chrX:29045286-29044865 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 313 |
| Conread position: | 479-965 |
| Cow position: | chrX:25310211-25310696 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 222 |
| Conread position: | 480-868 |
| Cow position: | chrX:12627342-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 488-929 |
| Cow position: | chrX:25325845-25325407 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 491-860 |
| Cow position: | chrX:25309720-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 295 |
| Conread position: | 491-884 |
| Cow position: | chrX:25309972-25310365 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 279 |
| Conread position: | 515-887 |
| Cow position: | chrX:25309660-25310032 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 194 |
| Conread position: | 517-868 |
| Cow position: | chrX:13826924-13826573 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 112 |
| Conread position: | 561-888 |
| Cow position: | chrX:25325857-25325528 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 562-783 |
| Cow position: | chrX:12627842-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 58 |
| Conread position: | 888-1160 |
| Cow position: | chrX:25310309-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 888-1180 |
| Cow position: | chrX:25310225-25310517 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 889-1156 |
| Cow position: | chrX:29044924-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1179 |
| Cow position: | chrX:25310142-25310432 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 137 |
| Conread position: | 889-1180 |
| Cow position: | chrX:25309974-25310265 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 889-1180 |
| Cow position: | chrX:25324663-25324372 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 889-1181 |
| Cow position: | chrX:25324747-25324455 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 211, 232 |
| Conread position: | 889-1191 |
| Cow position: | chrX:25325419-25325117 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1196 |
| Cow position: | chrX:25309806-25310113 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 889-1196 |
| Cow position: | chrX:25310058-25310365 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1197 |
| Cow position: | chrX:25325587-25325279 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 215, 223 |
| Conread position: | 889-1198 |
| Cow position: | chrX:25324915-25324606 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 232, 220 |
| Conread position: | 889-1200 |
| Cow position: | chrX:25325251-25324940 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 889-1200 |
| Cow position: | chrX:25325755-25325444 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 889-1207 |
| Cow position: | chrX:25324579-25324261 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 889-1207 |
| Cow position: | chrX:25325335-25325017 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 889-1207 |
| Cow position: | chrX:29045008-29044690 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1207 |
| Cow position: | chrX:29045092-29044774 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1207 |
| Cow position: | chrX:29045176-29044858 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1210 |
| Cow position: | chrX:25324999-25324678 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 111 |
| Conread position: | 890-1197 |
| Cow position: | chrX:25309725-25310030 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 892-1207 |
| Cow position: | chrX:25325837-25325521 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 32 |
Show alignments to all cow chromosomes.