• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rste21_g17.5
        

               
Conread position:
               
97-325
               

               
Cow position:
               
chrX:28856729-28856954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
97-339
               

               
Cow position:
               
chrX:11561904-11562151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
97-368
               

               
Cow position:
               
chrX:47232586-47232853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 184
               

               
Conread position:
               
100-267
               

               
Cow position:
               
chrX:10916507-10916671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
100-490
               

               
Cow position:
               
chrX:10959648-10959251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
105-373
               

               
Cow position:
               
chrX:10095784-10096058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 167
               

               
Conread position:
               
106-454
               

               
Cow position:
               
chrX:40180112-40179771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
106-466
               

               
Cow position:
               
chrX:47967360-47967727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
106-471
               

               
Cow position:
               
chrX:42470178-42469816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 105
               

               
Conread position:
               
106-498
               

               
Cow position:
               
chrX:34502679-34503072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
106-504
               

               
Cow position:
               
chrX:28866233-28865849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
107-303
               

               
Cow position:
               
chrX:877263-877070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
107-406
               

               
Cow position:
               
chrX:41167204-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
107-410
               

               
Cow position:
               
chrX:34192436-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
108-459
               

               
Cow position:
               
chrX:48195280-48194922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 251
               

               
Conread position:
               
108-560
               

               
Cow position:
               
chrX:9635420-9634975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 162
               

               
Conread position:
               
109-211
               

               
Cow position:
               
chrX:45410280-45410178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-252
               

               
Cow position:
               
chrX:47247147-47247005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
109-257
               

               
Cow position:
               
chrX:29925816-29925668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
109-268
               

               
Cow position:
               
chrX:46990022-46989867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
109-269
               

               
Cow position:
               
chrX:21795258-21795420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
109-297
               

               
Cow position:
               
chrX:126554-126742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 151
               

               
Conread position:
               
109-304
               

               
Cow position:
               
chrX:35937310-35937121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chrX:3464314-3464095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chrX:14162953-14163174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chrX:25946075-25945854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
109-335
               

               
Cow position:
               
chrX:42587667-42587437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chrX:42282198-42282420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
109-341
               

               
Cow position:
               
chrX:47757167-47756931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 184
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chrX:8558701-8558460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 172
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chrX:28105684-28105924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chrX:25458875-25458624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
110, 237
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chrX:44053020-44053266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
109-360
               

               
Cow position:
               
chrX:12466257-12466510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
109-364
               

               
Cow position:
               
chrX:26531720-26531983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
109-373
               

               
Cow position:
               
chrX:36250100-36249835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
104, 221
               

               
Conread position:
               
109-387
               

               
Cow position:
               
chrX:19015204-19015477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 92
               

               
Conread position:
               
109-414
               

               
Cow position:
               
chrX:1810399-1810092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
109-416
               

               
Cow position:
               
chrX:26876119-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
109-439
               

               
Cow position:
               
chrX:22538192-22537851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 272
               

               
Conread position:
               
109-439
               

               
Cow position:
               
chrX:23451409-23451072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
110, 221
               

               
Conread position:
               
109-439
               

               
Cow position:
               
chrX:35240626-35240958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
118, 220
               

               
Conread position:
               
109-445
               

               
Cow position:
               
chrX:39546211-39545880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
109-448
               

               
Cow position:
               
chrX:20376729-20377072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 261
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chrX:27680165-27680504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 33
               

               
Conread position:
               
109-462
               

               
Cow position:
               
chrX:7571668-7572021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 146
               

               
Conread position:
               
109-462
               

               
Cow position:
               
chrX:18695159-18694817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 126
               

               
Conread position:
               
109-483
               

               
Cow position:
               
chrX:917607-917231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
109-487
               

               
Cow position:
               
chrX:17631040-17630660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
109-487
               

               
Cow position:
               
chrX:19878830-19879179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
109-498
               

               
Cow position:
               
chrX:40269238-40269644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
109-512
               

               
Cow position:
               
chrX:5872075-5872481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 206
               

               
Conread position:
               
109-523
               

               
Cow position:
               
chrX:32171120-32170712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
109-533
               

               
Cow position:
               
chrX:34663077-34662656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
109-548
               

               
Cow position:
               
chrX:21064048-21064487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
109-551
               

               
Cow position:
               
chrX:46771210-46770754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 221
               

               
Conread position:
               
109-571
               

               
Cow position:
               
chrX:3654366-3654831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 246
               

               
Conread position:
               
109-571
               

               
Cow position:
               
chrX:4269306-4268842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 223
               

               
Conread position:
               
109-571
               

               
Cow position:
               
chrX:6413808-6414260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 83
               

               
Conread position:
               
109-571
               

               
Cow position:
               
chrX:10866105-10865642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
109-571
               

               
Cow position:
               
chrX:34532293-34532739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
109-574
               

               
Cow position:
               
chrX:13912841-13913306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
109-576
               

               
Cow position:
               
chrX:41238601-41238129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chrX:21672313-21672804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 241
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chrX:26492764-26493247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
103, 230
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chrX:45598842-45598366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
100, 145
               

               
Conread position:
               
110-588
               

               
Cow position:
               
chrX:28013677-28013198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
146, 100
               

               
Conread position:
               
111-459
               

               
Cow position:
               
chrX:3130344-3130685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
112-323
               

               
Cow position:
               
chrX:25411605-25411819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
112-328
               

               
Cow position:
               
chrX:33020251-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chrX:21665828-21665597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
112-365
               

               
Cow position:
               
chrX:43075763-43076010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 151
               

               
Conread position:
               
112-453
               

               
Cow position:
               
chrX:11455287-11454942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
112-574
               

               
Cow position:
               
chrX:43114936-43115380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
113-222
               

               
Cow position:
               
chrX:616640-616530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
113-230
               

               
Cow position:
               
chrX:12096481-12096367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
113-252
               

               
Cow position:
               
chrX:32871020-32870876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
113-255
               

               
Cow position:
               
chrX:30763654-30763513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
113-257
               

               
Cow position:
               
chrX:7382089-7382235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
113-257
               

               
Cow position:
               
chrX:8492992-8492842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
113-261
               

               
Cow position:
               
chrX:2523964-2523809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
113-268
               

               
Cow position:
               
chrX:6607187-6607346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-289
               

               
Cow position:
               
chrX:48370862-48371044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
113-295
               

               
Cow position:
               
chrX:23061220-23061396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
113-295
               

               
Cow position:
               
chrX:42855174-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
113-304
               

               
Cow position:
               
chrX:11581700-11581904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chrX:48227847-48227647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
113-307
               

               
Cow position:
               
chrX:4123601-4123800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
113-318
               

               
Cow position:
               
chrX:44731360-44731571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chrX:9997567-9997361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chrX:2499574-2499361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chrX:38967416-38967626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 121
               

               
Conread position:
               
113-328
               

               
Cow position:
               
chrX:39556051-39555854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
113-336
               

               
Cow position:
               
chrX:12018041-12018283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
113-337
               

               
Cow position:
               
chrX:17497862-17498075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chrX:35388141-35387909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chrX:40452447-40452214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
103, 223
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chrX:37836352-37836589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chrX:19188702-19188937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chrX:30162763-30162996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chrX:32743304-32743534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
168, 114
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chrX:20032065-20031829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chrX:36778172-36778412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 206
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chrX:16722036-16721803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 164
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chrX:40647744-40647988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chrX:27095885-27096115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
113-349
               

               
Cow position:
               
chrX:33803247-33803002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
113-350
               

               
Cow position:
               
chrX:7053970-7053724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
113-352
               

               
Cow position:
               
chrX:11674830-11675070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 180
               

               
Conread position:
               
113-353
               

               
Cow position:
               
chrX:10306436-10306684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 200
               

               
Conread position:
               
113-353
               

               
Cow position:
               
chrX:35041985-35042234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
113-354
               

               
Cow position:
               
chrX:35409434-35409668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
113-357
               

               
Cow position:
               
chrX:3649043-3648800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
143, 127
               

               
Conread position:
               
113-357
               

               
Cow position:
               
chrX:35609752-35610002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
113-360
               

               
Cow position:
               
chrX:21785533-21785789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
113-364
               

               
Cow position:
               
chrX:25419395-25419134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
113-366
               

               
Cow position:
               
chrX:44835050-44834794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 207
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chrX:28157251-28157527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
74, 174
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chrX:34270179-34270429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chrX:41198870-41199133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
144, 189
               

               
Conread position:
               
113-380
               

               
Cow position:
               
chrX:42994380-42994646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
113-383
               

               
Cow position:
               
chrX:28845612-28845869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
113-383
               

               
Cow position:
               
chrX:42874744-42875019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chrX:7718619-7718909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 189
               

               
Conread position:
               
113-410
               

               
Cow position:
               
chrX:24105392-24105688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
102, 186
               

               
Conread position:
               
113-419
               

               
Cow position:
               
chrX:678802-678482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 134
               

               
Conread position:
               
113-425
               

               
Cow position:
               
chrX:11589826-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
113-436
               

               
Cow position:
               
chrX:37416309-37415982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 285
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:5376135-5376467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 222
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:6493496-6493829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 200
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:16289796-16289468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 219
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:23299720-23300051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 235
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:37843486-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
98, 194
               

               
Conread position:
               
113-439
               

               
Cow position:
               
chrX:40544842-40544511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 218
               

               
Conread position:
               
113-442
               

               
Cow position:
               
chrX:40481105-40480776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
113-443
               

               
Cow position:
               
chrX:17541730-17542058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
113-443
               

               
Cow position:
               
chrX:26441014-26440688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 223
               

               
Conread position:
               
113-445
               

               
Cow position:
               
chrX:24259812-24259480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
113-446
               

               
Cow position:
               
chrX:11314012-11313685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
113-446
               

               
Cow position:
               
chrX:38102678-38102346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
113-448
               

               
Cow position:
               
chrX:9161354-9161677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
113-448
               

               
Cow position:
               
chrX:29289342-29289680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 169
               

               
Conread position:
               
113-448
               

               
Cow position:
               
chrX:38227324-38227007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
113-459
               

               
Cow position:
               
chrX:45404068-45403712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 262
               

               
Conread position:
               
113-459
               

               
Cow position:
               
chrX:46722975-46722621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 224
               

               
Conread position:
               
113-470
               

               
Cow position:
               
chrX:45414534-45414180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 238
               

               
Conread position:
               
113-486
               

               
Cow position:
               
chrX:17964756-17964382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
113-487
               

               
Cow position:
               
chrX:7646024-7646397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
113-488
               

               
Cow position:
               
chrX:35288426-35288797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 80
               

               
Conread position:
               
113-495
               

               
Cow position:
               
chrX:7695527-7695895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
113-496
               

               
Cow position:
               
chrX:20697842-20697459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 207
               

               
Conread position:
               
113-496
               

               
Cow position:
               
chrX:38007002-38006623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 66
               

               
Conread position:
               
113-497
               

               
Cow position:
               
chrX:11718014-11717634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
113-497
               

               
Cow position:
               
chrX:23583324-23583712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
106, 173
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chrX:8797014-8797399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chrX:27394248-27393876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 105
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chrX:28878396-28878024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chrX:31373340-31373690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
378, 29
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chrX:42171533-42171142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-500
               

               
Cow position:
               
chrX:45113394-45113774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
148, 108
               

               
Conread position:
               
113-504
               

               
Cow position:
               
chrX:40557910-40557520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 90
               

               
Conread position:
               
113-512
               

               
Cow position:
               
chrX:878605-878214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 29
               

               
Conread position:
               
113-541
               

               
Cow position:
               
chrX:13648018-13647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 90
               

               
Conread position:
               
113-548
               

               
Cow position:
               
chrX:11844475-11844035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
113-554
               

               
Cow position:
               
chrX:13868460-13868915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-555
               

               
Cow position:
               
chrX:8730845-8731306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 311
               

               
Conread position:
               
113-555
               

               
Cow position:
               
chrX:12309623-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
113-556
               

               
Cow position:
               
chrX:8899790-8900232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
99, 214
               

               
Conread position:
               
113-557
               

               
Cow position:
               
chrX:4768516-4768942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 86
               

               
Conread position:
               
113-559
               

               
Cow position:
               
chrX:37119365-37119791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 80
               

               
Conread position:
               
113-559
               

               
Cow position:
               
chrX:47344060-47344515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 172
               

               
Conread position:
               
113-562
               

               
Cow position:
               
chrX:27514634-27515078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
103, 181
               

               
Conread position:
               
113-567
               

               
Cow position:
               
chrX:22482923-22482465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 195
               

               
Conread position:
               
113-567
               

               
Cow position:
               
chrX:30421173-30420743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
113-567
               

               
Cow position:
               
chrX:31260864-31260401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
73, 165
               

               
Conread position:
               
113-567
               

               
Cow position:
               
chrX:34238487-34238945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-568
               

               
Cow position:
               
chrX:35268656-35269081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 57
               

               
Conread position:
               
113-570
               

               
Cow position:
               
chrX:11939158-11938726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:161194-161628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:14884196-14883729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 356
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:15545663-15546109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:23564031-23563562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 227
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:25035621-25035153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:25816130-25815671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 98
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:27446454-27446911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 229
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:27705359-27705815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:30133558-30133096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:30963106-30962647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 218
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:34376723-34377167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 29
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:38963875-38964325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:41122838-41123273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
113-571
               

               
Cow position:
               
chrX:48010360-48010833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 247
               

               
Conread position:
               
113-574
               

               
Cow position:
               
chrX:27106024-27106503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
114, 218
               

               
Conread position:
               
113-574
               

               
Cow position:
               
chrX:31443055-31442608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
113-574
               

               
Cow position:
               
chrX:34441684-34441222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
113-574
               

               
Cow position:
               
chrX:34454435-34454890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
145, 90
               

               
Conread position:
               
113-575
               

               
Cow position:
               
chrX:8925469-8925912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
113-575
               

               
Cow position:
               
chrX:38218481-38218945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
113-576
               

               
Cow position:
               
chrX:15596804-15597260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
113-576
               

               
Cow position:
               
chrX:27432153-27431692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 239
               

               
Conread position:
               
113-576
               

               
Cow position:
               
chrX:31949165-31948702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 107
               

               
Conread position:
               
113-579
               

               
Cow position:
               
chrX:5638403-5637942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
113-579
               

               
Cow position:
               
chrX:15485862-15485398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 237
               

               
Conread position:
               
113-579
               

               
Cow position:
               
chrX:38072005-38071515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
106, 215
               

               
Conread position:
               
113-579
               

               
Cow position:
               
chrX:47211084-47210599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 201
               

               
Conread position:
               
113-581
               

               
Cow position:
               
chrX:16762537-16763005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
113-581
               

               
Cow position:
               
chrX:27509254-27508786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 157
               

               
Conread position:
               
113-581
               

               
Cow position:
               
chrX:44192677-44192202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
140, 82
               

               
Conread position:
               
113-581
               

               
Cow position:
               
chrX:46032952-46032488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
113-581
               

               
Cow position:
               
chrX:46532743-46532254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-584
               

               
Cow position:
               
chrX:4633085-4632613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 94
               

               
Conread position:
               
113-584
               

               
Cow position:
               
chrX:7351065-7351543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
113-584
               

               
Cow position:
               
chrX:32020356-32019893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 223
               

               
Conread position:
               
113-584
               

               
Cow position:
               
chrX:41103554-41104042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 264
               

               
Conread position:
               
113-584
               

               
Cow position:
               
chrX:45501914-45502375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 170
               

               
Conread position:
               
113-585
               

               
Cow position:
               
chrX:15147420-15146956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
113-586
               

               
Cow position:
               
chrX:21593049-21593532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 236
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chrX:10462404-10462585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
114-486
               

               
Cow position:
               
chrX:5017641-5017282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 102
               

               
Conread position:
               
115-571
               

               
Cow position:
               
chrX:36283113-36283568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
116-222
               

               
Cow position:
               
chrX:9651277-9651171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
116-222
               

               
Cow position:
               
chrX:33519386-33519492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
116-226
               

               
Cow position:
               
chrX:48578184-48578294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
116-260
               

               
Cow position:
               
chrX:26619594-26619446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
116-268
               

               
Cow position:
               
chrX:3161247-3161090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
116-273
               

               
Cow position:
               
chrX:18293701-18293858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
116-288
               

               
Cow position:
               
chrX:44908091-44908261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chrX:32978487-32978308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
116-295
               

               
Cow position:
               
chrX:6639893-6640080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
116-295
               

               
Cow position:
               
chrX:42585300-42585121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
116-303
               

               
Cow position:
               
chrX:9953910-9954104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chrX:2206775-2206588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
100, 113
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chrX:45693875-45694064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 146
               

               
Conread position:
               
116-316
               

               
Cow position:
               
chrX:46984733-46984522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
29, 202
               

               
Conread position:
               
116-319
               

               
Cow position:
               
chrX:866090-866297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:2104174-2104384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:4622185-4621971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:15531386-15531172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:20320998-20320785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:23215876-23216090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:26759800-26759586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:34333431-34333217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chrX:46424983-46424771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chrX:4869312-4869529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
116-329
               

               
Cow position:
               
chrX:2648581-2648369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
116-335
               

               
Cow position:
               
chrX:45658310-45658091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 132
               

               
Conread position:
               
116-338
               

               
Cow position:
               
chrX:1105035-1104805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
116-340
               

               
Cow position:
               
chrX:1331703-1331936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
116-340
               

               
Cow position:
               
chrX:28579990-28580222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
116-341
               

               
Cow position:
               
chrX:5123592-5123359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
116-341
               

               
Cow position:
               
chrX:36693004-36693232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 163
               

               
Conread position:
               
116-344
               

               
Cow position:
               
chrX:8682161-8681928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 166
               

               
Conread position:
               
116-346
               

               
Cow position:
               
chrX:10373076-10373317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 177
               

               
Conread position:
               
116-346
               

               
Cow position:
               
chrX:46044813-46045048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 187
               

               
Conread position:
               
116-346
               

               
Cow position:
               
chrX:47379698-47379466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
116-346
               

               
Cow position:
               
chrX:48247063-48246849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chrX:2383258-2383491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chrX:24441478-24441244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
104, 214
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chrX:32747427-32747689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chrX:42339167-42338943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
214, 108
               

               
Conread position:
               
116-348
               

               
Cow position:
               
chrX:45412886-45412654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
100, 129
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chrX:13323231-13322989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 164
               

               
Conread position:
               
116-352
               

               
Cow position:
               
chrX:160264-160025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
116-352
               

               
Cow position:
               
chrX:6563281-6563529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
116-352
               

               
Cow position:
               
chrX:18456161-18456410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
116-352
               

               
Cow position:
               
chrX:39700996-39701230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
116-353
               

               
Cow position:
               
chrX:3653532-3653767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
98, 131
               

               
Conread position:
               
116-353
               

               
Cow position:
               
chrX:17271520-17271275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 188
               

               
Conread position:
               
116-354
               

               
Cow position:
               
chrX:2945099-2944854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
116-354
               

               
Cow position:
               
chrX:10428308-10428553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:671240-670997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
110, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:1576494-1576251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:5288918-5288675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 218
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:14781576-14781333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
99, 235
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:14801048-14800806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 233
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:14846305-14846062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 216
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:15577872-15577629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:20742755-20742998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:26275908-26276150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 218
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:26709373-26709616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:32981996-32981757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 226
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:33827253-33827006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 216
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:37816357-37816600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 210
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:45903947-45904190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
103, 234
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chrX:47608183-47608426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 234
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chrX:23280775-23281023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chrX:35803583-35803830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 173
               

               
Conread position:
               
116-358
               

               
Cow position:
               
chrX:1946952-1946701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
116-358
               

               
Cow position:
               
chrX:14819481-14819725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 217
               

               
Conread position:
               
116-358
               

               
Cow position:
               
chrX:43983940-43984188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 173
               

               
Conread position:
               
116-358
               

               
Cow position:
               
chrX:45566399-45566654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 178
               

               
Conread position:
               
116-359
               

               
Cow position:
               
chrX:48675846-48676090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 156
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chrX:11949724-11949482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 177
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chrX:23572031-23571780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 226
               

               
Conread position:
               
116-363
               

               
Cow position:
               
chrX:25452318-25452561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
116-364
               

               
Cow position:
               
chrX:18078141-18077887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 215
               

               
Conread position:
               
116-364
               

               
Cow position:
               
chrX:30143516-30143262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
111, 215
               

               
Conread position:
               
116-364
               

               
Cow position:
               
chrX:30228342-30228090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 188
               

               
Conread position:
               
116-365
               

               
Cow position:
               
chrX:20877994-20877739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
111, 212
               

               
Conread position:
               
116-368
               

               
Cow position:
               
chrX:15996923-15997184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
78, 227
               

               
Conread position:
               
116-368
               

               
Cow position:
               
chrX:23497894-23497646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chrX:34754423-34754166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 189
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chrX:38439242-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chrX:48243683-48243433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
211, 73
               

               
Conread position:
               
116-381
               

               
Cow position:
               
chrX:46382007-46381743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 183
               

               
Conread position:
               
116-403
               

               
Cow position:
               
chrX:8070931-8070642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
116-410
               

               
Cow position:
               
chrX:14900952-14900669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
116-418
               

               
Cow position:
               
chrX:25288910-25288602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 234
               

               
Conread position:
               
116-431
               

               
Cow position:
               
chrX:42507878-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 180
               

               
Conread position:
               
116-436
               

               
Cow position:
               
chrX:19290541-19290852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chrX:23264668-23264341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 223
               

               
Conread position:
               
116-438
               

               
Cow position:
               
chrX:27594413-27594086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 234
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:2425353-2425025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
111, 215
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:2467648-2467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 206
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:4905220-4904894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
113, 213
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:15814866-15815177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 83
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:21833654-21833982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 218
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:22493776-22494104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
113, 215
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:24587685-24587357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 216
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:32094681-32094353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
111, 214
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:32584044-32583716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 215
               

               
Conread position:
               
116-439
               

               
Cow position:
               
chrX:41157080-41157408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 218
               

               
Conread position:
               
116-441
               

               
Cow position:
               
chrX:25848688-25849000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
116-442
               

               
Cow position:
               
chrX:24132382-24132055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
116-442
               

               
Cow position:
               
chrX:40692969-40692655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 68
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chrX:27176551-27176213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
100, 196
               

               
Conread position:
               
116-454
               

               
Cow position:
               
chrX:23514249-23513909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
116-457
               

               
Cow position:
               
chrX:27498537-27498883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 232
               

               
Conread position:
               
116-459
               

               
Cow position:
               
chrX:10412217-10411873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
116-459
               

               
Cow position:
               
chrX:19689987-19690328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
116-459
               

               
Cow position:
               
chrX:38936470-38936813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
116-459
               

               
Cow position:
               
chrX:48652958-48652608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
116-477
               

               
Cow position:
               
chrX:16284178-16283812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 228
               

               
Conread position:
               
116-478
               

               
Cow position:
               
chrX:32431396-32431756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
116-483
               

               
Cow position:
               
chrX:39071466-39071827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chrX:25337948-25338328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
96, 333
               

               
Conread position:
               
116-487
               

               
Cow position:
               
chrX:15329422-15329783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
268, 26
               

               
Conread position:
               
116-488
               

               
Cow position:
               
chrX:19930425-19930784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
116-488
               

               
Cow position:
               
chrX:32309875-32310247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chrX:2029159-2029532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chrX:5900226-5900610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
138, 229
               

               
Conread position:
               
116-498
               

               
Cow position:
               
chrX:28134115-28134492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
116-501
               

               
Cow position:
               
chrX:33493544-33493930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
116-504
               

               
Cow position:
               
chrX:6278737-6278342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 241
               

               
Conread position:
               
116-512
               

               
Cow position:
               
chrX:32623352-32623734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 9
               

               
Conread position:
               
116-512
               

               
Cow position:
               
chrX:41884649-41884246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
116-517
               

               
Cow position:
               
chrX:45174613-45175022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
86, 170
               

               
Conread position:
               
116-524
               

               
Cow position:
               
chrX:33639740-33640152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 169
               

               
Conread position:
               
116-552
               

               
Cow position:
               
chrX:22821816-22822264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
96, 149
               

               
Conread position:
               
116-554
               

               
Cow position:
               
chrX:36975718-36976163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 167
               

               
Conread position:
               
116-562
               

               
Cow position:
               
chrX:20151619-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
116-563
               

               
Cow position:
               
chrX:31436249-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
116-565
               

               
Cow position:
               
chrX:34543556-34544008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
116-567
               

               
Cow position:
               
chrX:22074569-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 164
               

               
Conread position:
               
116-567
               

               
Cow position:
               
chrX:35413401-35413818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 95
               

               
Conread position:
               
116-567
               

               
Cow position:
               
chrX:38642029-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
116-568
               

               
Cow position:
               
chrX:35224071-35224501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
116-568
               

               
Cow position:
               
chrX:41526752-41526309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:7178678-7179111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:9201316-9201771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:9252409-9251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 80
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:12249574-12250043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:12980060-12979607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:17231503-17231965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 110
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:22812831-22813293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:25571227-25570776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:38549217-38549675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 149
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:38935050-38935507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 171
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:40826978-40826522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chrX:44054570-44055031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 232
               

               
Conread position:
               
116-574
               

               
Cow position:
               
chrX:6544025-6544476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 191
               

               
Conread position:
               
116-574
               

               
Cow position:
               
chrX:12437470-12437052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 26
               

               
Conread position:
               
116-574
               

               
Cow position:
               
chrX:44961516-44961986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
116-575
               

               
Cow position:
               
chrX:11655855-11656310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 224
               

               
Conread position:
               
116-580
               

               
Cow position:
               
chrX:38094756-38094290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
116-580
               

               
Cow position:
               
chrX:47873572-47873099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
116-581
               

               
Cow position:
               
chrX:41879162-41878697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
116-584
               

               
Cow position:
               
chrX:16703439-16703916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 216
               

               
Conread position:
               
116-584
               

               
Cow position:
               
chrX:16711723-16712199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
116-584
               

               
Cow position:
               
chrX:31729227-31729677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
117-261
               

               
Cow position:
               
chrX:29049740-29049880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chrX:32128210-32127986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
117-409
               

               
Cow position:
               
chrX:25232360-25232656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
117-571
               

               
Cow position:
               
chrX:21642708-21642253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
117-579
               

               
Cow position:
               
chrX:45967932-45968374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
117-580
               

               
Cow position:
               
chrX:9360653-9361123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
118-323
               

               
Cow position:
               
chrX:36922418-36922622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 180
               

               
Conread position:
               
118-352
               

               
Cow position:
               
chrX:27994486-27994247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 215
               

               
Conread position:
               
119-255
               

               
Cow position:
               
chrX:20167976-20168117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
119-257
               

               
Cow position:
               
chrX:16531771-16531909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
119-257
               

               
Cow position:
               
chrX:45787426-45787563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
119-267
               

               
Cow position:
               
chrX:33205220-33205072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
137, 105
               

               
Conread position:
               
119-288
               

               
Cow position:
               
chrX:18812030-18812196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
119-292
               

               
Cow position:
               
chrX:42499257-42499077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
119-315
               

               
Cow position:
               
chrX:36840645-36840845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
119-318
               

               
Cow position:
               
chrX:24234706-24234502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chrX:12115810-12116038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
119-340
               

               
Cow position:
               
chrX:7513288-7513506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
119-341
               

               
Cow position:
               
chrX:16790065-16789855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
211, 23
               

               
Conread position:
               
119-341
               

               
Cow position:
               
chrX:37048809-37048580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
30, 147
               

               
Conread position:
               
119-343
               

               
Cow position:
               
chrX:1978277-1978509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
119-344
               

               
Cow position:
               
chrX:4482734-4482967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chrX:11806245-11806012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
119-347
               

               
Cow position:
               
chrX:14924772-14925007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
119-350
               

               
Cow position:
               
chrX:40648435-40648656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
119-352
               

               
Cow position:
               
chrX:23024475-23024712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 119
               

               
Conread position:
               
119-353
               

               
Cow position:
               
chrX:11981903-11982146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
119-353
               

               
Cow position:
               
chrX:42086634-42086862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
119-355
               

               
Cow position:
               
chrX:3895204-3894964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
105, 213
               

               
Conread position:
               
119-356
               

               
Cow position:
               
chrX:1728645-1728417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
119-360
               

               
Cow position:
               
chrX:9096439-9096684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
119-360
               

               
Cow position:
               
chrX:45786902-45787145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
119-362
               

               
Cow position:
               
chrX:13265848-13265607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
96, 113
               

               
Conread position:
               
119-364
               

               
Cow position:
               
chrX:44870858-44870620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
137, 80
               

               
Conread position:
               
119-384
               

               
Cow position:
               
chrX:34990813-34991073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 37
               

               
Conread position:
               
119-399
               

               
Cow position:
               
chrX:40788976-40789265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 149
               

               
Conread position:
               
119-408
               

               
Cow position:
               
chrX:11746614-11746905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
119-415
               

               
Cow position:
               
chrX:6234679-6234380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
119-436
               

               
Cow position:
               
chrX:12405597-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
119-436
               

               
Cow position:
               
chrX:16783266-16783581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
119-436
               

               
Cow position:
               
chrX:20945340-20945655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
119-439
               

               
Cow position:
               
chrX:30454850-30454525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 209
               

               
Conread position:
               
119-447
               

               
Cow position:
               
chrX:47481571-47481897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
93, 229
               

               
Conread position:
               
119-448
               

               
Cow position:
               
chrX:3154474-3154141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
119-448
               

               
Cow position:
               
chrX:12826519-12826852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
119-451
               

               
Cow position:
               
chrX:43567711-43568024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
266, 72
               

               
Conread position:
               
119-454
               

               
Cow position:
               
chrX:26625905-26625563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 171
               

               
Conread position:
               
119-459
               

               
Cow position:
               
chrX:7508911-7509252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
119-478
               

               
Cow position:
               
chrX:37232181-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 165
               

               
Conread position:
               
119-492
               

               
Cow position:
               
chrX:488262-488650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
119-492
               

               
Cow position:
               
chrX:17725750-17726120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
119-493
               

               
Cow position:
               
chrX:43527275-43527653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 232
               

               
Conread position:
               
119-500
               

               
Cow position:
               
chrX:17888634-17888271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
119-512
               

               
Cow position:
               
chrX:9416921-9416520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 267
               

               
Conread position:
               
119-552
               

               
Cow position:
               
chrX:31294770-31294360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
266, 19
               

               
Conread position:
               
119-553
               

               
Cow position:
               
chrX:35542663-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 225
               

               
Conread position:
               
119-567
               

               
Cow position:
               
chrX:17794757-17795203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 131
               

               
Conread position:
               
119-570
               

               
Cow position:
               
chrX:20887872-20887422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:754730-755171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
93, 223
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:4996383-4996817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
264, 52
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:20340119-20339667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 79
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:33855461-33854998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 335
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:34565069-34565513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 35
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:37489502-37489957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 92
               

               
Conread position:
               
119-571
               

               
Cow position:
               
chrX:42381328-42380884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 165
               

               
Conread position:
               
119-574
               

               
Cow position:
               
chrX:17662825-17662390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 218
               

               
Conread position:
               
119-576
               

               
Cow position:
               
chrX:42247412-42246947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 141
               

               
Conread position:
               
119-577
               

               
Cow position:
               
chrX:2300705-2301157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
245, 92
               

               
Conread position:
               
119-577
               

               
Cow position:
               
chrX:30338154-30337720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
119-579
               

               
Cow position:
               
chrX:30921957-30922409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
119-581
               

               
Cow position:
               
chrX:31489284-31489757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
119-584
               

               
Cow position:
               
chrX:5118713-5118255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 60
               

               
Conread position:
               
119-584
               

               
Cow position:
               
chrX:28632708-28632242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
119-584
               

               
Cow position:
               
chrX:31250164-31250631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
119-586
               

               
Cow position:
               
chrX:151673-152148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
120-277
               

               
Cow position:
               
chrX:48536892-48536730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
120-303
               

               
Cow position:
               
chrX:9855073-9855263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
120-330
               

               
Cow position:
               
chrX:48684450-48684239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 94
               

               
Conread position:
               
120-334
               

               
Cow position:
               
chrX:47191626-47191422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
120-335
               

               
Cow position:
               
chrX:13245364-13245586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
120-346
               

               
Cow position:
               
chrX:29032190-29032411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
120-347
               

               
Cow position:
               
chrX:40540369-40540137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 22
               

               
Conread position:
               
120-374
               

               
Cow position:
               
chrX:35681118-35681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
120-379
               

               
Cow position:
               
chrX:23970162-23970411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
211, 22
               

               
Conread position:
               
120-439
               

               
Cow position:
               
chrX:6655494-6655170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 212
               

               
Conread position:
               
120-439
               

               
Cow position:
               
chrX:18194686-18195008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 209
               

               
Conread position:
               
120-439
               

               
Cow position:
               
chrX:18897878-18897558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
120-447
               

               
Cow position:
               
chrX:11856202-11856531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
120-448
               

               
Cow position:
               
chrX:7425237-7425567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 175
               

               
Conread position:
               
120-459
               

               
Cow position:
               
chrX:21004457-21004797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
120-471
               

               
Cow position:
               
chrX:39558575-39558224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
120-488
               

               
Cow position:
               
chrX:11073418-11073049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
120-498
               

               
Cow position:
               
chrX:619235-618856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 319
               

               
Conread position:
               
120-516
               

               
Cow position:
               
chrX:16416281-16416668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
120-571
               

               
Cow position:
               
chrX:47249015-47248569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
25, 195
               

               
Conread position:
               
120-574
               

               
Cow position:
               
chrX:45430244-45429800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 190
               

               
Conread position:
               
120-584
               

               
Cow position:
               
chrX:45448660-45449153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 202
               

               
Conread position:
               
121-257
               

               
Cow position:
               
chrX:25283372-25283238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chrX:4942976-4942780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chrX:28097899-28098115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chrX:40116199-40116421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chrX:25237951-25238185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
121-373
               

               
Cow position:
               
chrX:27516306-27516556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
133, 97
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chrX:20582804-20583052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 114
               

               
Conread position:
               
121-396
               

               
Cow position:
               
chrX:41743687-41743963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
121-446
               

               
Cow position:
               
chrX:4865025-4865333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
160, 96
               

               
Conread position:
               
121-448
               

               
Cow position:
               
chrX:13382098-13382426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 232
               

               
Conread position:
               
121-451
               

               
Cow position:
               
chrX:28111280-28111614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
91, 202
               

               
Conread position:
               
121-482
               

               
Cow position:
               
chrX:11082839-11082486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
121-482
               

               
Cow position:
               
chrX:47054754-47054389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
121-487
               

               
Cow position:
               
chrX:42011054-42011422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
121-488
               

               
Cow position:
               
chrX:25713574-25713936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
121-499
               

               
Cow position:
               
chrX:6690474-6690107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
121-500
               

               
Cow position:
               
chrX:34401771-34402158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 248
               

               
Conread position:
               
121-512
               

               
Cow position:
               
chrX:27772182-27771802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
121-567
               

               
Cow position:
               
chrX:15007377-15006935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 219
               

               
Conread position:
               
121-571
               

               
Cow position:
               
chrX:27442781-27442310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
121-571
               

               
Cow position:
               
chrX:40183576-40183126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 226
               

               
Conread position:
               
121-574
               

               
Cow position:
               
chrX:37072180-37072617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
121-581
               

               
Cow position:
               
chrX:28847105-28846655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 103
               

               
Conread position:
               
122-247
               

               
Cow position:
               
chrX:33538723-33538849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
122-268
               

               
Cow position:
               
chrX:31745272-31745122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 136
               

               
Conread position:
               
122-295
               

               
Cow position:
               
chrX:46701044-46700875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
122-319
               

               
Cow position:
               
chrX:43049117-43049323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
122-346
               

               
Cow position:
               
chrX:38840663-38840890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
122-368
               

               
Cow position:
               
chrX:4750523-4750282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
122-368
               

               
Cow position:
               
chrX:29509669-29509418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 247
               

               
Conread position:
               
122-383
               

               
Cow position:
               
chrX:15139770-15139511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
122-433
               

               
Cow position:
               
chrX:20709846-20710161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 206
               

               
Conread position:
               
122-446
               

               
Cow position:
               
chrX:9041454-9041144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
122-448
               

               
Cow position:
               
chrX:20792043-20791714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 167
               

               
Conread position:
               
122-459
               

               
Cow position:
               
chrX:45089218-45089559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
122-579
               

               
Cow position:
               
chrX:21663084-21663530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
123-348
               

               
Cow position:
               
chrX:42461970-42461741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
101, 225
               

               
Conread position:
               
123-432
               

               
Cow position:
               
chrX:36961412-36961723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
123-571
               

               
Cow position:
               
chrX:46073046-46072602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 367
               

               
Conread position:
               
124-439
               

               
Cow position:
               
chrX:41271882-41271563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
124-574
               

               
Cow position:
               
chrX:24366055-24365591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 32
               

               
Conread position:
               
125-235
               

               
Cow position:
               
chrX:29193786-29193892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
125-448
               

               
Cow position:
               
chrX:630530-630208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
125-448
               

               
Cow position:
               
chrX:7497023-7497344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
125-476
               

               
Cow position:
               
chrX:10302117-10302471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
125-567
               

               
Cow position:
               
chrX:33000679-33001122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 230
               

               
Conread position:
               
125-567
               

               
Cow position:
               
chrX:44396793-44397235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
125-571
               

               
Cow position:
               
chrX:13177687-13177256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 167
               

               
Conread position:
               
125-584
               

               
Cow position:
               
chrX:33466392-33466862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 7
               

               
Conread position:
               
126-477
               

               
Cow position:
               
chrX:37574635-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
126-571
               

               
Cow position:
               
chrX:13191765-13191338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 183
               

               
Conread position:
               
126-575
               

               
Cow position:
               
chrX:48236590-48237049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 215
               

               
Conread position:
               
127-277
               

               
Cow position:
               
chrX:7127842-7127993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
127-295
               

               
Cow position:
               
chrX:13058360-13058535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 162
               

               
Conread position:
               
127-313
               

               
Cow position:
               
chrX:7806157-7806346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
127-323
               

               
Cow position:
               
chrX:34385109-34385312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
127-338
               

               
Cow position:
               
chrX:16689272-16689491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
127-339
               

               
Cow position:
               
chrX:19019332-19019110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
127-339
               

               
Cow position:
               
chrX:24200972-24201181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
127-342
               

               
Cow position:
               
chrX:41403752-41403977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
127-342
               

               
Cow position:
               
chrX:41410300-41410525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chrX:17042470-17042695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chrX:10437885-10437664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
127-378
               

               
Cow position:
               
chrX:280914-281156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
127-437
               

               
Cow position:
               
chrX:6265806-6265508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
203, 77
               

               
Conread position:
               
127-448
               

               
Cow position:
               
chrX:1514621-1514317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
127-487
               

               
Cow position:
               
chrX:1503119-1503468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
127-496
               

               
Cow position:
               
chrX:23091661-23092021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 138
               

               
Conread position:
               
127-565
               

               
Cow position:
               
chrX:1616268-1615836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 273
               

               
Conread position:
               
127-570
               

               
Cow position:
               
chrX:6488366-6488792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 83
               

               
Conread position:
               
127-576
               

               
Cow position:
               
chrX:41673883-41674331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
54, 247
               

               
Conread position:
               
127-580
               

               
Cow position:
               
chrX:16541896-16541419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
127-583
               

               
Cow position:
               
chrX:29602053-29601589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
127-584
               

               
Cow position:
               
chrX:12290515-12290961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
127-585
               

               
Cow position:
               
chrX:7721764-7722214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
128-419
               

               
Cow position:
               
chrX:13785586-13785287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
128-498
               

               
Cow position:
               
chrX:4044069-4043715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
128-503
               

               
Cow position:
               
chrX:20801560-20801926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
129-291
               

               
Cow position:
               
chrX:47487282-47487442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 65
               

               
Conread position:
               
129-574
               

               
Cow position:
               
chrX:1499451-1499885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 83
               

               
Conread position:
               
129-576
               

               
Cow position:
               
chrX:11633460-11633915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 242
               

               
Conread position:
               
130-257
               

               
Cow position:
               
chrX:25163601-25163731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
130-290
               

               
Cow position:
               
chrX:25036918-25036750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
130-335
               

               
Cow position:
               
chrX:2186041-2186243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 133
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chrX:37910235-37910593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
130-500
               

               
Cow position:
               
chrX:14599312-14599686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 199
               

               
Conread position:
               
130-505
               

               
Cow position:
               
chrX:29120841-29121208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
130-514
               

               
Cow position:
               
chrX:24424605-24424234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 210
               

               
Conread position:
               
130-571
               

               
Cow position:
               
chrX:22624264-22624688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
130-574
               

               
Cow position:
               
chrX:37781330-37780880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chrX:46430075-46429894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chrX:45015369-45015582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chrX:41560455-41560220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
131-439
               

               
Cow position:
               
chrX:25568615-25568297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
131-445
               

               
Cow position:
               
chrX:47144871-47145184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
131-471
               

               
Cow position:
               
chrX:20030037-20030378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 224
               

               
Conread position:
               
131-567
               

               
Cow position:
               
chrX:40567383-40567829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
132-340
               

               
Cow position:
               
chrX:24317847-24318060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
132-354
               

               
Cow position:
               
chrX:35284407-35284632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chrX:43408783-43409046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
132-439
               

               
Cow position:
               
chrX:35258947-35258638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 172
               

               
Conread position:
               
132-451
               

               
Cow position:
               
chrX:39126123-39126431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
252, 19
               

               
Conread position:
               
132-458
               

               
Cow position:
               
chrX:27480843-27480514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
132-482
               

               
Cow position:
               
chrX:30543501-30543148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
132-488
               

               
Cow position:
               
chrX:41733403-41733057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
132-571
               

               
Cow position:
               
chrX:41790659-41790199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
132-571
               

               
Cow position:
               
chrX:42492729-42492293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
132-581
               

               
Cow position:
               
chrX:34554511-34554963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
133-260
               

               
Cow position:
               
chrX:20787394-20787264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
133-346
               

               
Cow position:
               
chrX:46315593-46315375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
133-584
               

               
Cow position:
               
chrX:34411625-34412089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
134-309
               

               
Cow position:
               
chrX:2004173-2003995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
121, 8
               

               
Conread position:
               
134-337
               

               
Cow position:
               
chrX:26940705-26940511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
135-571
               

               
Cow position:
               
chrX:27174782-27175228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 249
               

               
Conread position:
               
136-306
               

               
Cow position:
               
chrX:16324175-16324003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
136-347
               

               
Cow position:
               
chrX:20752048-20752260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
136-557
               

               
Cow position:
               
chrX:16996293-16996708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
136-570
               

               
Cow position:
               
chrX:29542430-29542001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 305
               

               
Conread position:
               
136-584
               

               
Cow position:
               
chrX:3579735-3580186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
137-328
               

               
Cow position:
               
chrX:44063927-44063737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 146
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chrX:15575325-15575549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 195
               

               
Conread position:
               
137-428
               

               
Cow position:
               
chrX:29876277-29875995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
137-437
               

               
Cow position:
               
chrX:15576334-15576639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 195
               

               
Conread position:
               
137-478
               

               
Cow position:
               
chrX:7161860-7162188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
137-567
               

               
Cow position:
               
chrX:14973945-14973533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
138-247
               

               
Cow position:
               
chrX:45976673-45976779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
138-337
               

               
Cow position:
               
chrX:47453917-47454122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
138-352
               

               
Cow position:
               
chrX:31340495-31340716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 205
               

               
Conread position:
               
138-358
               

               
Cow position:
               
chrX:28836110-28835895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
138-448
               

               
Cow position:
               
chrX:47046729-47046412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 209
               

               
Conread position:
               
138-477
               

               
Cow position:
               
chrX:45845886-45846232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
138-571
               

               
Cow position:
               
chrX:9425951-9425534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 125
               

               
Conread position:
               
138-574
               

               
Cow position:
               
chrX:40035655-40035211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
139-571
               

               
Cow position:
               
chrX:45110447-45110879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 212
               

               
Conread position:
               
139-574
               

               
Cow position:
               
chrX:38852988-38853442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 166
               

               
Conread position:
               
140-567
               

               
Cow position:
               
chrX:7277711-7278130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
141-303
               

               
Cow position:
               
chrX:29770385-29770215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
142-334
               

               
Cow position:
               
chrX:26285774-26285968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
142-438
               

               
Cow position:
               
chrX:48248619-48248915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 133
               

               
Conread position:
               
142-448
               

               
Cow position:
               
chrX:45993007-45993332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
22, 203
               

               
Conread position:
               
142-546
               

               
Cow position:
               
chrX:1055595-1055178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
142-554
               

               
Cow position:
               
chrX:841953-842366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 211
               

               
Conread position:
               
142-557
               

               
Cow position:
               
chrX:10831702-10831267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 313
               

               
Conread position:
               
142-557
               

               
Cow position:
               
chrX:32420013-32420425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 181
               

               
Conread position:
               
142-557
               

               
Cow position:
               
chrX:41192479-41192903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 363
               

               
Conread position:
               
142-563
               

               
Cow position:
               
chrX:35273146-35273592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 149
               

               
Conread position:
               
142-571
               

               
Cow position:
               
chrX:46587612-46588048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 214
               

               
Conread position:
               
142-574
               

               
Cow position:
               
chrX:4826033-4825617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
142-574
               

               
Cow position:
               
chrX:39938728-39938305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
144-374
               

               
Cow position:
               
chrX:17908487-17908261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
85, 66
               

               
Conread position:
               
144-498
               

               
Cow position:
               
chrX:43730418-43730074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 85
               

               
Conread position:
               
144-557
               

               
Cow position:
               
chrX:29545083-29544672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 200
               

               
Conread position:
               
145-561
               

               
Cow position:
               
chrX:1176185-1175772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
62, 180
               

               
Conread position:
               
147-447
               

               
Cow position:
               
chrX:43780053-43779746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 198
               

               
Conread position:
               
148-342
               

               
Cow position:
               
chrX:4091448-4091646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
148-345
               

               
Cow position:
               
chrX:30833045-30832848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
81, 154
               

               
Conread position:
               
148-439
               

               
Cow position:
               
chrX:47303079-47302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
148-459
               

               
Cow position:
               
chrX:45148975-45149281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 176
               

               
Conread position:
               
149-346
               

               
Cow position:
               
chrX:18999690-18999893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
149-459
               

               
Cow position:
               
chrX:47301102-47300790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
72, 137
               

               
Conread position:
               
150-439
               

               
Cow position:
               
chrX:40809489-40809786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
150-576
               

               
Cow position:
               
chrX:10252379-10251970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
152-579
               

               
Cow position:
               
chrX:47484467-47484022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 201
               

               
Conread position:
               
156-307
               

               
Cow position:
               
chrX:2764678-2764828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 105
               

               
Conread position:
               
156-351
               

               
Cow position:
               
chrX:18195750-18195937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
156-356
               

               
Cow position:
               
chrX:37540933-37541140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 150
               

               
Conread position:
               
156-373
               

               
Cow position:
               
chrX:45874807-45875024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 176
               

               
Conread position:
               
156-584
               

               
Cow position:
               
chrX:8869600-8869163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
157-304
               

               
Cow position:
               
chrX:23785463-23785621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
157-448
               

               
Cow position:
               
chrX:44657155-44656855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
157-466
               

               
Cow position:
               
chrX:47362802-47362503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
157-503
               

               
Cow position:
               
chrX:31311835-31312184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
157-504
               

               
Cow position:
               
chrX:3489075-3488735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
175, 54
               

               
Conread position:
               
158-301
               

               
Cow position:
               
chrX:24149450-24149597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
158-356
               

               
Cow position:
               
chrX:1505523-1505720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
159-501
               

               
Cow position:
               
chrX:42235722-42235372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 200
               

               
Conread position:
               
160-552
               

               
Cow position:
               
chrX:7863758-7863371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 137
               

               
Conread position:
               
161-364
               

               
Cow position:
               
chrX:31256681-31256884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
163-501
               

               
Cow position:
               
chrX:36067835-36068172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 78
               

               
Conread position:
               
165-329
               

               
Cow position:
               
chrX:45759215-45759376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
165-560
               

               
Cow position:
               
chrX:32820847-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
166-557
               

               
Cow position:
               
chrX:7336645-7337061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
169-523
               

               
Cow position:
               
chrX:24288111-24287753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chrX:31252239-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
169-571
               

               
Cow position:
               
chrX:9770863-9770458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 179
               

               
Conread position:
               
169-571
               

               
Cow position:
               
chrX:36060973-36061387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
45, 190
               

               
Conread position:
               
170-581
               

               
Cow position:
               
chrX:47186498-47186087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
171-551
               

               
Cow position:
               
chrX:47166061-47165676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
172-489
               

               
Cow position:
               
chrX:23341143-23340826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 132
               

               
Conread position:
               
172-541
               

               
Cow position:
               
chrX:169701-169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
172-574
               

               
Cow position:
               
chrX:27145447-27145830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 131
               

               
Conread position:
               
172-585
               

               
Cow position:
               
chrX:18485619-18486046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
173-348
               

               
Cow position:
               
chrX:46146735-46146560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chrX:22387421-22387015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
28, 164
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chrX:35885903-35885504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 149
               

               
Conread position:
               
175-511
               

               
Cow position:
               
chrX:46433310-46433655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 181
               

               
Conread position:
               
176-574
               

               
Cow position:
               
chrX:34792482-34792092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
176-588
               

               
Cow position:
               
chrX:4398954-4399362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
181-318
               

               
Cow position:
               
chrX:41271374-41271235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
181-340
               

               
Cow position:
               
chrX:14003811-14003645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
181-459
               

               
Cow position:
               
chrX:44836828-44837089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
170, 46
               

               
Conread position:
               
181-561
               

               
Cow position:
               
chrX:22921147-22921539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
181-569
               

               
Cow position:
               
chrX:6407382-6407770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
181-581
               

               
Cow position:
               
chrX:14955934-14955527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
182-383
               

               
Cow position:
               
chrX:41992207-41992010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
182-533
               

               
Cow position:
               
chrX:27301705-27302067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
182-542
               

               
Cow position:
               
chrX:14275901-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
182-584
               

               
Cow position:
               
chrX:37955672-37956087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
183-571
               

               
Cow position:
               
chrX:15231822-15231431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
183-584
               

               
Cow position:
               
chrX:25208011-25207621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
184-569
               

               
Cow position:
               
chrX:27206636-27207020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 178
               

               
Conread position:
               
191-571
               

               
Cow position:
               
chrX:46547033-46546645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
191-576
               

               
Cow position:
               
chrX:36355959-36356337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
192-345
               

               
Cow position:
               
chrX:35969238-35969085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
193-557
               

               
Cow position:
               
chrX:27227969-27228343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
197-488
               

               
Cow position:
               
chrX:39415516-39415228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
198-459
               

               
Cow position:
               
chrX:29680409-29680148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
18, 148
               

               
Conread position:
               
200-488
               

               
Cow position:
               
chrX:48014298-48014578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
201-571
               

               
Cow position:
               
chrX:870312-869954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
201-571
               

               
Cow position:
               
chrX:21327757-21328142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
203-504
               

               
Cow position:
               
chrX:38728595-38728890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
203-548
               

               
Cow position:
               
chrX:27946200-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chrX:16055072-16055275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
207-569
               

               
Cow position:
               
chrX:41870933-41871283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
211-465
               

               
Cow position:
               
chrX:19273857-19273588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
212-336
               

               
Cow position:
               
chrX:36723224-36723098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
212-341
               

               
Cow position:
               
chrX:48385493-48385360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
212-442
               

               
Cow position:
               
chrX:27685114-27685345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 132
               

               
Conread position:
               
212-487
               

               
Cow position:
               
chrX:37986100-37986366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
212-489
               

               
Cow position:
               
chrX:38066583-38066309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
212-498
               

               
Cow position:
               
chrX:616395-616106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 139
               

               
Conread position:
               
212-498
               

               
Cow position:
               
chrX:11085190-11084913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
212-567
               

               
Cow position:
               
chrX:21986425-21986077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 0
               

               
Conread position:
               
212-571
               

               
Cow position:
               
chrX:18204596-18204238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 147
               

               
Conread position:
               
212-571
               

               
Cow position:
               
chrX:47280065-47279708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
169, 115
               

               
Conread position:
               
212-574
               

               
Cow position:
               
chrX:34313900-34314252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
212-577
               

               
Cow position:
               
chrX:35822209-35822564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
212-580
               

               
Cow position:
               
chrX:36393480-36393104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
212-581
               

               
Cow position:
               
chrX:11614566-11614913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
212-584
               

               
Cow position:
               
chrX:29723608-29723990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
212-584
               

               
Cow position:
               
chrX:41027024-41027400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 47
               

               
Conread position:
               
212-586
               

               
Cow position:
               
chrX:8917263-8917638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
44, 127
               

               
Conread position:
               
213-459
               

               
Cow position:
               
chrX:21566270-21566520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
213-498
               

               
Cow position:
               
chrX:42873260-42873535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
213-563
               

               
Cow position:
               
chrX:40685463-40685109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
213-568
               

               
Cow position:
               
chrX:48262474-48262830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 119
               

               
Conread position:
               
213-584
               

               
Cow position:
               
chrX:5919364-5919728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
214-495
               

               
Cow position:
               
chrX:9365806-9365529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
171, 128
               

               
Conread position:
               
214-571
               

               
Cow position:
               
chrX:20584192-20584540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 251
               

               
Conread position:
               
214-575
               

               
Cow position:
               
chrX:34505178-34504821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 77
               

               
Conread position:
               
214-584
               

               
Cow position:
               
chrX:45976789-45977165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 262
               

               
Conread position:
               
215-500
               

               
Cow position:
               
chrX:6260289-6259994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
215-562
               

               
Cow position:
               
chrX:45875261-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
216-465
               

               
Cow position:
               
chrX:26493766-26493517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
216-499
               

               
Cow position:
               
chrX:7710672-7710388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
219-383
               

               
Cow position:
               
chrX:19003174-19003333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
219-569
               

               
Cow position:
               
chrX:10829306-10829661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
223-574
               

               
Cow position:
               
chrX:40320283-40320639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
226-498
               

               
Cow position:
               
chrX:5679685-5679422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
227-571
               

               
Cow position:
               
chrX:4512116-4512473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
227-571
               

               
Cow position:
               
chrX:34315407-34315755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
227-584
               

               
Cow position:
               
chrX:4403196-4403560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
228-439
               

               
Cow position:
               
chrX:27119582-27119790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
228-561
               

               
Cow position:
               
chrX:44744934-44744604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
228-574
               

               
Cow position:
               
chrX:26881685-26881331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 307
               

               
Conread position:
               
229-571
               

               
Cow position:
               
chrX:24331662-24332005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
229-584
               

               
Cow position:
               
chrX:46291023-46291381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
157, 15
               

               
Conread position:
               
231-567
               

               
Cow position:
               
chrX:42927933-42927606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 103
               

               
Conread position:
               
232-571
               

               
Cow position:
               
chrX:33539052-33539390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
232-574
               

               
Cow position:
               
chrX:29229896-29230238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
232-583
               

               
Cow position:
               
chrX:9651138-9650785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 70
               

               
Conread position:
               
234-512
               

               
Cow position:
               
chrX:29194123-29194394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
231, 60
               

               
Conread position:
               
234-571
               

               
Cow position:
               
chrX:17949601-17949264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
235-478
               

               
Cow position:
               
chrX:45670117-45670354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
237-471
               

               
Cow position:
               
chrX:11851777-11851554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
147, 97
               

               
Conread position:
               
243-498
               

               
Cow position:
               
chrX:18273159-18272905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
244-448
               

               
Cow position:
               
chrX:16348671-16348469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
246-555
               

               
Cow position:
               
chrX:31515070-31515383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
246-568
               

               
Cow position:
               
chrX:10516157-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
249-585
               

               
Cow position:
               
chrX:34837150-34836835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
249-587
               

               
Cow position:
               
chrX:12095870-12095526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
250-576
               

               
Cow position:
               
chrX:38560462-38560783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
251-567
               

               
Cow position:
               
chrX:47345240-47345554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
251-570
               

               
Cow position:
               
chrX:20168464-20168782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 85
               

               
Conread position:
               
253-571
               

               
Cow position:
               
chrX:33654933-33654615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
253-571
               

               
Cow position:
               
chrX:45648781-45649098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
253-574
               

               
Cow position:
               
chrX:1466069-1466394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
254-556
               

               
Cow position:
               
chrX:23113186-23113505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
254-572
               

               
Cow position:
               
chrX:918818-918500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 236
               

               
Conread position:
               
254-574
               

               
Cow position:
               
chrX:29050156-29050473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
255-574
               

               
Cow position:
               
chrX:42855365-42855694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
257-584
               

               
Cow position:
               
chrX:8492993-8493306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
208, 20
               

               
Conread position:
               
258-500
               

               
Cow position:
               
chrX:11318054-11317814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 78
               

               
Conread position:
               
258-571
               

               
Cow position:
               
chrX:35590844-35590530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 92
               

               
Conread position:
               
259-584
               

               
Cow position:
               
chrX:40680525-40680853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 318
               

               
Conread position:
               
259-586
               

               
Cow position:
               
chrX:6559531-6559213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
131, 82
               

               
Conread position:
               
263-498
               

               
Cow position:
               
chrX:5135607-5135370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
96, 108
               

               
Conread position:
               
264-571
               

               
Cow position:
               
chrX:48071080-48071390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 67
               

               
Conread position:
               
264-584
               

               
Cow position:
               
chrX:27261107-27261430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
22, 26
               

               
Conread position:
               
265-567
               

               
Cow position:
               
chrX:39220000-39220312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
266-501
               

               
Cow position:
               
chrX:23562556-23562787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
266-574
               

               
Cow position:
               
chrX:36866092-36866404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
266-581
               

               
Cow position:
               
chrX:22283753-22284077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 56
               

               
Conread position:
               
266-584
               

               
Cow position:
               
chrX:22115396-22115073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
267-534
               

               
Cow position:
               
chrX:4515606-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
267-584
               

               
Cow position:
               
chrX:4153113-4152803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 218
               

               
Conread position:
               
272-571
               

               
Cow position:
               
chrX:48003774-48004074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
273-548
               

               
Cow position:
               
chrX:19965474-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
273-558
               

               
Cow position:
               
chrX:33800251-33800536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
281-571
               

               
Cow position:
               
chrX:2675021-2674725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
95, 72
               

               
Conread position:
               
282-571
               

               
Cow position:
               
chrX:13146919-13147212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 5
               

               
Conread position:
               
284-567
               

               
Cow position:
               
chrX:1088197-1087924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
284-571
               

               
Cow position:
               
chrX:27380292-27380588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
284-574
               

               
Cow position:
               
chrX:4109129-4109416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
284-579
               

               
Cow position:
               
chrX:20957187-20957473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
284-584
               

               
Cow position:
               
chrX:296334-296633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
188, 59
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
285-550
               

               
Cow position:
               
chrX:27511367-27511628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
285-571
               

               
Cow position:
               
chrX:39352720-39353000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
288-562
               

               
Cow position:
               
chrX:19469563-19469296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
288-586
               

               
Cow position:
               
chrX:40108573-40108268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
290-571
               

               
Cow position:
               
chrX:5134420-5134702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
291-584
               

               
Cow position:
               
chrX:35985764-35986056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 95
               

               
Conread position:
               
292-459
               

               
Cow position:
               
chrX:25328659-25328503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
297-442
               

               
Cow position:
               
chrX:44095209-44095356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
297-495
               

               
Cow position:
               
chrX:19943285-19943089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
297-567
               

               
Cow position:
               
chrX:22393034-22392764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
87, 171
               

               
Conread position:
               
298-570
               

               
Cow position:
               
chrX:36367989-36367707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
300-568
               

               
Cow position:
               
chrX:4645957-4645689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
300-581
               

               
Cow position:
               
chrX:27306407-27306676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
36, 39
               

               
Conread position:
               
301-574
               

               
Cow position:
               
chrX:6599828-6599543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chrX:11326143-11325868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
304-584
               

               
Cow position:
               
chrX:19394511-19394795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
305-505
               

               
Cow position:
               
chrX:40532084-40531886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
305-567
               

               
Cow position:
               
chrX:24749047-24749311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
305-571
               

               
Cow position:
               
chrX:16984587-16984863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
309-471
               

               
Cow position:
               
chrX:29585084-29585244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
309-565
               

               
Cow position:
               
chrX:47061358-47061608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 64
               

               
Conread position:
               
310-584
               

               
Cow position:
               
chrX:4289404-4289674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
311-574
               

               
Cow position:
               
chrX:48574612-48574880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
311-584
               

               
Cow position:
               
chrX:45391748-45391468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
316-584
               

               
Cow position:
               
chrX:41941597-41941863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
327-584
               

               
Cow position:
               
chrX:24633665-24633928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
329-587
               

               
Cow position:
               
chrX:42450031-42449766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
330-557
               

               
Cow position:
               
chrX:45383061-45382847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
54, 20
               

               
Conread position:
               
330-571
               

               
Cow position:
               
chrX:16836303-16836066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
334-576
               

               
Cow position:
               
chrX:26843284-26843032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
335-567
               

               
Cow position:
               
chrX:27075064-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
335-574
               

               
Cow position:
               
chrX:28940230-28940475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
337-582
               

               
Cow position:
               
chrX:3806670-3806918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
338-584
               

               
Cow position:
               
chrX:42893916-42894163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
339-571
               

               
Cow position:
               
chrX:12972673-12972906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
342-571
               

               
Cow position:
               
chrX:32208827-32208599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
343-581
               

               
Cow position:
               
chrX:2935953-2936194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
344-571
               

               
Cow position:
               
chrX:38587846-38587617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 205
               

               
Conread position:
               
344-581
               

               
Cow position:
               
chrX:17292951-17293193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
344-584
               

               
Cow position:
               
chrX:39290356-39290596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
345-571
               

               
Cow position:
               
chrX:42479831-42480055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
346-554
               

               
Cow position:
               
chrX:41862363-41862566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
350-568
               

               
Cow position:
               
chrX:4466970-4467176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
351-574
               

               
Cow position:
               
chrX:32943072-32942849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
351-581
               

               
Cow position:
               
chrX:27668954-27668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 176
               

               
Conread position:
               
360-574
               

               
Cow position:
               
chrX:29467765-29467550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
362-581
               

               
Cow position:
               
chrX:31479986-31480201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
363-567
               

               
Cow position:
               
chrX:38301825-38302038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
363-573
               

               
Cow position:
               
chrX:11762985-11762781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
363-581
               

               
Cow position:
               
chrX:20583682-20583897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
27, 142
               

               
Conread position:
               
364-570
               

               
Cow position:
               
chrX:47854998-47855204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
365-574
               

               
Cow position:
               
chrX:16556198-16555992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
366-571
               

               
Cow position:
               
chrX:5026275-5026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 119
               

               
Conread position:
               
368-574
               

               
Cow position:
               
chrX:32191154-32190940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
372-575
               

               
Cow position:
               
chrX:32866900-32867101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
373-581
               

               
Cow position:
               
chrX:23359085-23358879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
377-567
               

               
Cow position:
               
chrX:8326934-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
378-575
               

               
Cow position:
               
chrX:41858850-41858652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
379-571
               

               
Cow position:
               
chrX:18439028-18439225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 85
               

               
Conread position:
               
379-588
               

               
Cow position:
               
chrX:15100018-15100224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
191, 13
               

               
Conread position:
               
383-581
               

               
Cow position:
               
chrX:34991401-34991598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 99
               

               
Conread position:
               
392-584
               

               
Cow position:
               
chrX:31983539-31983336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
395-557
               

               
Cow position:
               
chrX:30824038-30824199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
395-566
               

               
Cow position:
               
chrX:45759720-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
395-570
               

               
Cow position:
               
chrX:41166776-41166602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
395-571
               

               
Cow position:
               
chrX:35409801-35409980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
395-571
               

               
Cow position:
               
chrX:46909864-46910036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
395-574
               

               
Cow position:
               
chrX:20666852-20666671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
395-574
               

               
Cow position:
               
chrX:42875261-42875440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-584
               

               
Cow position:
               
chrX:41453351-41453540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
396-571
               

               
Cow position:
               
chrX:23471816-23471640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 88
               

               
Conread position:
               
396-584
               

               
Cow position:
               
chrX:1101607-1101791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
102, 71
               

               
Conread position:
               
396-585
               

               
Cow position:
               
chrX:48372445-48372260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
398-574
               

               
Cow position:
               
chrX:46068707-46068533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
399-564
               

               
Cow position:
               
chrX:11529399-11529559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
399-576
               

               
Cow position:
               
chrX:27270428-27270602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
401-587
               

               
Cow position:
               
chrX:27170794-27170981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
402-571
               

               
Cow position:
               
chrX:17524328-17524155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
402-578
               

               
Cow position:
               
chrX:6480540-6480361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 175
               

               
Conread position:
               
402-584
               

               
Cow position:
               
chrX:42086884-42087069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
403-570
               

               
Cow position:
               
chrX:23497634-23497470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
403-571
               

               
Cow position:
               
chrX:17525810-17525649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
403-571
               

               
Cow position:
               
chrX:47979355-47979526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
409-571
               

               
Cow position:
               
chrX:41215385-41215551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
409-584
               

               
Cow position:
               
chrX:40556396-40556221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
413-570
               

               
Cow position:
               
chrX:39642555-39642401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
413-576
               

               
Cow position:
               
chrX:14135745-14135907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
416-581
               

               
Cow position:
               
chrX:29682041-29681880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
420-574
               

               
Cow position:
               
chrX:35029852-35029705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
421-567
               

               
Cow position:
               
chrX:4486949-4486800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
421-568
               

               
Cow position:
               
chrX:43059176-43059031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
421-579
               

               
Cow position:
               
chrX:13785147-13784976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
424-570
               

               
Cow position:
               
chrX:5487861-5487721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
424-574
               

               
Cow position:
               
chrX:4750254-4750107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
425-577
               

               
Cow position:
               
chrX:31279845-31279693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
428-567
               

               
Cow position:
               
chrX:43028314-43028453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
430-584
               

               
Cow position:
               
chrX:37176958-37177109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
143, 106
               

               
Conread position:
               
439-574
               

               
Cow position:
               
chrX:38727046-38726913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 50
               
Show alignments to all cow chromosomes.