Cow genome map
| Conread name: | Ss1.1-rste23_k1.5 |
| Conread position: | 1-73 |
| Cow position: | chr18:40324130-40324058 (view UCSC Genome Browser custom track) |
| Alignm length: | 73 |
| Alignm identity: | 70 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-398 |
| Cow position: | chr18:42837478-42837139 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 64-473 |
| Cow position: | chr18:42791926-42792344 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 64-478 |
| Cow position: | chr18:44239963-44240385 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 70-478 |
| Cow position: | chr18:43175229-43174812 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 154 |
| Conread position: | 71-446 |
| Cow position: | chr18:44184338-44183953 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 71-457 |
| Cow position: | chr18:51789597-51789201 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 71-478 |
| Cow position: | chr18:40324504-40324088 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 71-480 |
| Cow position: | chr18:42792100-42792519 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 71-480 |
| Cow position: | chr18:51969385-51969802 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 71-482 |
| Cow position: | chr18:44184422-44184001 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 71-483 |
| Cow position: | chr18:51812756-51812334 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 72-443 |
| Cow position: | chr18:50246459-50246839 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 72-480 |
| Cow position: | chr18:40324755-40324337 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 73-480 |
| Cow position: | chr18:44184924-44184507 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 73-521 |
| Cow position: | chr18:40323998-40323557 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 141 |
| Conread position: | 75-472 |
| Cow position: | chr18:42985092-42984685 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 76-478 |
| Cow position: | chr18:52428438-52428850 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 76-478 |
| Cow position: | chr18:52433619-52434031 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 76-479 |
| Cow position: | chr18:52428186-52428599 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 146 |
| Conread position: | 76-479 |
| Cow position: | chr18:52433283-52433696 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 76-480 |
| Cow position: | chr18:43119938-43119524 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 53, 148 |
| Conread position: | 76-481 |
| Cow position: | chr18:42985427-42985012 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 76-484 |
| Cow position: | chr18:43120106-43119688 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 151 |
| Conread position: | 77-400 |
| Cow position: | chr18:44397885-44397556 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 77-457 |
| Cow position: | chr18:41948878-41948488 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 145 |
| Conread position: | 77-480 |
| Cow position: | chr18:43120189-43119776 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 145 |
| Conread position: | 78-446 |
| Cow position: | chr18:41198382-41198760 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 78-472 |
| Cow position: | chr18:54993123-54993527 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 78-473 |
| Cow position: | chr18:43175473-43175068 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 78-478 |
| Cow position: | chr18:41197710-41198119 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 78-478 |
| Cow position: | chr18:42837633-42837224 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 78-479 |
| Cow position: | chr18:42744414-42744003 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 152 |
| Conread position: | 78-479 |
| Cow position: | chr18:52447915-52448327 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 78-480 |
| Cow position: | chr18:42674850-42674438 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 78-480 |
| Cow position: | chr18:52447663-52448075 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 78-483 |
| Cow position: | chr18:41197962-41198377 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 181 |
| Conread position: | 78-483 |
| Cow position: | chr18:43093283-43092868 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 78-492 |
| Cow position: | chr18:44398052-44397628 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 78-504 |
| Cow position: | chr18:52447411-52447851 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 79-473 |
| Cow position: | chr18:14453968-14453564 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 48, 140 |
| Conread position: | 79-478 |
| Cow position: | chr18:43022851-43022443 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 79-480 |
| Cow position: | chr18:33064382-33063971 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 79-480 |
| Cow position: | chr18:42675017-42674606 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 145 |
| Conread position: | 80-473 |
| Cow position: | chr18:41197880-41198283 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 80-473 |
| Cow position: | chr18:43093449-43093046 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 80-483 |
| Cow position: | chr18:40086716-40086300 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 82-452 |
| Cow position: | chr18:54980035-54980415 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 82-480 |
| Cow position: | chr18:42675350-42674942 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 47, 142 |
| Conread position: | 82-483 |
| Cow position: | chr18:44240400-44240811 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 140 |
| Conread position: | 83-479 |
| Cow position: | chr18:42837964-42837558 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 83-479 |
| Cow position: | chr18:52428109-52428515 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 83-482 |
| Cow position: | chr18:42675265-42674857 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 83-483 |
| Cow position: | chr18:42985588-42985178 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 84-478 |
| Cow position: | chr18:40086123-40085727 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 84-478 |
| Cow position: | chr18:44398382-44397979 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 85-479 |
| Cow position: | chr18:42744740-42744339 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 89-444 |
| Cow position: | chr18:55018110-55018475 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 89-472 |
| Cow position: | chr18:54979790-54980183 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 93-472 |
| Cow position: | chr18:33064620-33064231 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 93-473 |
| Cow position: | chr18:53498377-53498763 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 93-474 |
| Cow position: | chr18:44240243-44240633 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 154 |
| Conread position: | 93-483 |
| Cow position: | chr18:44184820-44184420 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 159 |
| Conread position: | 93-483 |
| Cow position: | chr18:50083600-50084000 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 131 |
| Conread position: | 126-483 |
| Cow position: | chr18:41197507-41197873 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 243-488 |
| Cow position: | chr18:42675354-42675102 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 249-478 |
| Cow position: | chr18:33064125-33063890 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 250-471 |
| Cow position: | chr18:51400842-51401070 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 254-479 |
| Cow position: | chr18:52427863-52428095 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 257-494 |
| Cow position: | chr18:44253826-44253580 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 277-483 |
| Cow position: | chr18:40324881-40324670 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 36 |
Show alignments to all cow chromosomes.