Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rsug01_i23.5
        

               Conread position:
               182-384
               

               Cow position:
               chr11:51683454-51683244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               186-415
               

               Cow position:
               chr11:29954601-29954369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               49, 10
               

               Conread position:
               191-425
               

               Cow position:
               chr11:36361414-36361657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               90, 37
               

               Conread position:
               193-412
               

               Cow position:
               chr11:30322270-30322492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               88, 40
               

               Conread position:
               195-362
               

               Cow position:
               chr11:13397293-13397457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               86, 41
               

               Conread position:
               196-398
               

               Cow position:
               chr11:12350038-12350239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               32, 73
               

               Conread position:
               196-409
               

               Cow position:
               chr11:68829841-68829623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               83, 42
               

               Conread position:
               196-415
               

               Cow position:
               chr11:9699032-9699247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               196-416
               

               Cow position:
               chr11:75749684-75749476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               85, 24
               

               Conread position:
               196-427
               

               Cow position:
               chr11:52179572-52179347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               83, 46
               

               Conread position:
               197-415
               

               Cow position:
               chr11:27514662-27514879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               17, 30
               

               Conread position:
               197-415
               

               Cow position:
               chr11:37999479-37999262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               17, 90
               

               Conread position:
               197-417
               

               Cow position:
               chr11:5961531-5961301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               39, 21
               

               Conread position:
               197-419
               

               Cow position:
               chr11:58173840-58173619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               5, 23
               

               Conread position:
               197-421
               

               Cow position:
               chr11:45276927-45277157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               198-392
               

               Cow position:
               chr11:71303798-71303599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               83, 12
               

               Conread position:
               199-412
               

               Cow position:
               chr11:63435743-63435522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               50, 208
               

               Conread position:
               201-426
               

               Cow position:
               chr11:87171854-87172090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               13, 28
               

               Conread position:
               202-439
               

               Cow position:
               chr11:38236464-38236223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 113
               

               Conread position:
               203-326
               

               Cow position:
               chr11:46335064-46334944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 16
               

               Conread position:
               203-405
               

               Cow position:
               chr11:62606634-62606424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               203-410
               

               Cow position:
               chr11:3715456-3715244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 65
               

               Conread position:
               203-416
               

               Cow position:
               chr11:21508228-21507999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               9, 38
               

               Conread position:
               203-417
               

               Cow position:
               chr11:18699084-18698875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               78, 38
               

               Conread position:
               203-417
               

               Cow position:
               chr11:53773905-53773677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               203-431
               

               Cow position:
               chr11:6423182-6423417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               204-398
               

               Cow position:
               chr11:37490359-37490562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               60, 30
               

               Conread position:
               204-415
               

               Cow position:
               chr11:35665346-35665565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               61, 9
               

               Conread position:
               204-416
               

               Cow position:
               chr11:51195883-51196086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               77, 36
               

               Conread position:
               204-417
               

               Cow position:
               chr11:35536793-35536583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               12, 67
               

               Conread position:
               204-426
               

               Cow position:
               chr11:67804952-67804734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               53, 68
               

               Conread position:
               204-458
               

               Cow position:
               chr11:25791475-25791739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               23, 228
               

               Conread position:
               205-400
               

               Cow position:
               chr11:63201470-63201267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               14, 30
               

               Conread position:
               205-406
               

               Cow position:
               chr11:17807747-17807956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 21
               

               Conread position:
               205-411
               

               Cow position:
               chr11:5218946-5219160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               205-415
               

               Cow position:
               chr11:1067227-1067442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               76, 22
               

               Conread position:
               205-417
               

               Cow position:
               chr11:21886042-21885829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               74, 15
               

               Conread position:
               205-417
               

               Cow position:
               chr11:39250176-39249968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               205-425
               

               Cow position:
               chr11:38334735-38334511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 87
               

               Conread position:
               206-348
               

               Cow position:
               chr11:44874776-44874628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               56, 13
               

               Conread position:
               206-376
               

               Cow position:
               chr11:65436433-65436257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               101, 11
               

               Conread position:
               206-383
               

               Cow position:
               chr11:17369737-17369560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               75, 35
               

               Conread position:
               206-417
               

               Cow position:
               chr11:46784679-46784470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               24, 119
               

               Conread position:
               207-411
               

               Cow position:
               chr11:63919855-63920052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               207-425
               

               Cow position:
               chr11:48900646-48900857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               207-426
               

               Cow position:
               chr11:41437975-41438200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               74, 27
               

               Conread position:
               208-416
               

               Cow position:
               chr11:67911949-67912154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               46, 106
               

               Conread position:
               208-417
               

               Cow position:
               chr11:41549126-41549338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               208-475
               

               Cow position:
               chr11:31875307-31875029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 241
               

               Conread position:
               209-402
               

               Cow position:
               chr11:30370313-30370115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               209-415
               

               Cow position:
               chr11:37804342-37804556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               209-416
               

               Cow position:
               chr11:45283137-45282925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               209-417
               

               Cow position:
               chr11:62811505-62811293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               170
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               72, 10
               

               Conread position:
               209-417
               

               Cow position:
               chr11:66572282-66572501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               209-418
               

               Cow position:
               chr11:6233668-6233885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               17, 31
               

               Conread position:
               209-425
               

               Cow position:
               chr11:39462828-39462611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 10
               

               Conread position:
               210-357
               

               Cow position:
               chr11:31525448-31525595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               210-367
               

               Cow position:
               chr11:32586915-32587078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               210-374
               

               Cow position:
               chr11:38656976-38657145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               70, 18
               

               Conread position:
               210-412
               

               Cow position:
               chr11:80370322-80370115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               9, 32
               

               Conread position:
               210-416
               

               Cow position:
               chr11:30808392-30808597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 10
               

               Conread position:
               210-417
               

               Cow position:
               chr11:27502495-27502706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               71, 29
               

               Conread position:
               210-417
               

               Cow position:
               chr11:56311392-56311600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               71, 8
               

               Conread position:
               210-417
               

               Cow position:
               chr11:71934738-71934959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               39, 146
               

               Conread position:
               210-417
               

               Cow position:
               chr11:85723901-85723693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 24
               

               Conread position:
               210-420
               

               Cow position:
               chr11:29482233-29482443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               96, 30
               

               Conread position:
               210-433
               

               Cow position:
               chr11:10956665-10956894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               211-392
               

               Cow position:
               chr11:63695632-63695825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               70, 40
               

               Conread position:
               211-415
               

               Cow position:
               chr11:33286745-33286959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               211-417
               

               Cow position:
               chr11:12555095-12555310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               211-417
               

               Cow position:
               chr11:52380665-52380876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               211-420
               

               Cow position:
               chr11:2084354-2084136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               212-350
               

               Cow position:
               chr11:57874014-57873871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               212-385
               

               Cow position:
               chr11:59744201-59744033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 15
               

               Conread position:
               212-390
               

               Cow position:
               chr11:31866786-31866604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               69, 116
               

               Conread position:
               212-394
               

               Cow position:
               chr11:27248698-27248509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               212-410
               

               Cow position:
               chr11:7378789-7378592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               62, 84
               

               Conread position:
               212-410
               

               Cow position:
               chr11:30638746-30638947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               70, 28
               

               Conread position:
               212-410
               

               Cow position:
               chr11:33374174-33373968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               212-411
               

               Cow position:
               chr11:21830003-21830208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               212-412
               

               Cow position:
               chr11:1932281-1932491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               212-415
               

               Cow position:
               chr11:8584521-8584325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               69, 6
               

               Conread position:
               212-415
               

               Cow position:
               chr11:71708011-71707814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               96, 58
               

               Conread position:
               212-416
               

               Cow position:
               chr11:48429324-48429107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               48, 27
               

               Conread position:
               212-417
               

               Cow position:
               chr11:5231442-5231651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 16
               

               Conread position:
               212-419
               

               Cow position:
               chr11:47784987-47784768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               212-425
               

               Cow position:
               chr11:69417610-69417391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               172
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               68, 197
               

               Conread position:
               212-426
               

               Cow position:
               chr11:42067069-42066846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               212-430
               

               Cow position:
               chr11:35182782-35183006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               69, 13
               

               Conread position:
               212-433
               

               Cow position:
               chr11:70951074-70950848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               69, 117
               

               Conread position:
               213-378
               

               Cow position:
               chr11:35848935-35849103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               18, 113
               

               Conread position:
               213-420
               

               Cow position:
               chr11:18924951-18924738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               68, 28
               

               Conread position:
               213-422
               

               Cow position:
               chr11:75285552-75285769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 20
               

               Conread position:
               214-392
               

               Cow position:
               chr11:73638061-73637875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 156
               

               Conread position:
               214-408
               

               Cow position:
               chr11:77554453-77554645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               18, 98
               

               Conread position:
               214-410
               

               Cow position:
               chr11:47310781-47310983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               65, 19
               

               Conread position:
               214-417
               

               Cow position:
               chr11:54741881-54742085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 23
               

               Conread position:
               214-417
               

               Cow position:
               chr11:55494870-55494675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               8, 27
               

               Conread position:
               214-417
               

               Cow position:
               chr11:63433863-63434062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               67, 20
               

               Conread position:
               215-399
               

               Cow position:
               chr11:68909651-68909841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               66, 11
               

               Conread position:
               215-412
               

               Cow position:
               chr11:52297020-52297220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               66, 25
               

               Conread position:
               215-412
               

               Cow position:
               chr11:75090016-75090218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               66, 18
               

               Conread position:
               215-417
               

               Cow position:
               chr11:65607489-65607693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               56, 19
               

               Conread position:
               215-423
               

               Cow position:
               chr11:80639346-80639557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               26, 205
               

               Conread position:
               216-408
               

               Cow position:
               chr11:6319926-6320128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               216-411
               

               Cow position:
               chr11:23251397-23251591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               98, 23
               

               Conread position:
               216-412
               

               Cow position:
               chr11:49396321-49396525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               216-412
               

               Cow position:
               chr11:58186076-58185883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               216-412
               

               Cow position:
               chr11:62567026-62566843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               65, 39
               

               Conread position:
               216-419
               

               Cow position:
               chr11:35544292-35544076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               216-423
               

               Cow position:
               chr11:32054982-32055193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 149
               

               Conread position:
               216-432
               

               Cow position:
               chr11:18119703-18119480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               65, 25
               

               Conread position:
               216-514
               

               Cow position:
               chr11:7924401-7924691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 53
               

               Conread position:
               217-342
               

               Cow position:
               chr11:36180644-36180517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               63, 22
               

               Conread position:
               217-394
               

               Cow position:
               chr11:56115138-56114959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               56, 22
               

               Conread position:
               217-398
               

               Cow position:
               chr11:35276453-35276284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               217-401
               

               Cow position:
               chr11:62789327-62789142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               64, 24
               

               Conread position:
               217-409
               

               Cow position:
               chr11:866481-866294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               64, 22
               

               Conread position:
               217-415
               

               Cow position:
               chr11:69168789-69168583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               64, 16
               

               Conread position:
               217-416
               

               Cow position:
               chr11:6094202-6094406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               162
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               217-417
               

               Cow position:
               chr11:30211085-30210900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               217-417
               

               Cow position:
               chr11:31901373-31901181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               97, 63
               

               Conread position:
               217-417
               

               Cow position:
               chr11:48315199-48315401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               217-419
               

               Cow position:
               chr11:63998890-63999098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               64, 24
               

               Conread position:
               217-422
               

               Cow position:
               chr11:46329700-46329490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 43
               

               Conread position:
               217-426
               

               Cow position:
               chr11:36521082-36520861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               217-433
               

               Cow position:
               chr11:13863900-13864126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               218-398
               

               Cow position:
               chr11:54872561-54872745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               63, 27
               

               Conread position:
               218-408
               

               Cow position:
               chr11:7273036-7273220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               218-410
               

               Cow position:
               chr11:42083652-42083471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               63, 23
               

               Conread position:
               218-416
               

               Cow position:
               chr11:42835752-42835954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               89, 62
               

               Conread position:
               218-426
               

               Cow position:
               chr11:35724169-35723955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               61, 16
               

               Conread position:
               219-382
               

               Cow position:
               chr11:2937473-2937633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               219-397
               

               Cow position:
               chr11:62535111-62534924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 102
               

               Conread position:
               219-406
               

               Cow position:
               chr11:18777394-18777592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               62, 21
               

               Conread position:
               219-406
               

               Cow position:
               chr11:49486989-49486785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               219-408
               

               Cow position:
               chr11:1485658-1485857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               219-410
               

               Cow position:
               chr11:19549676-19549483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               62, 48
               

               Conread position:
               219-411
               

               Cow position:
               chr11:41278385-41278187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               62, 8
               

               Conread position:
               219-412
               

               Cow position:
               chr11:36092719-36092916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               62, 72
               

               Conread position:
               219-412
               

               Cow position:
               chr11:50472519-50472317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               219-412
               

               Cow position:
               chr11:77745054-77745251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               219-415
               

               Cow position:
               chr11:31024601-31024809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               219-415
               

               Cow position:
               chr11:43914493-43914289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               219-417
               

               Cow position:
               chr11:16320464-16320280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 23
               

               Conread position:
               219-417
               

               Cow position:
               chr11:77017432-77017237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               15, 121
               

               Conread position:
               219-422
               

               Cow position:
               chr11:65058411-65058622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 138
               

               Conread position:
               220-394
               

               Cow position:
               chr11:44859084-44859268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               8, 30
               

               Conread position:
               220-398
               

               Cow position:
               chr11:33369350-33369165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               156
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               220-403
               

               Cow position:
               chr11:74839801-74839620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               220-406
               

               Cow position:
               chr11:19147943-19148130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               61, 128
               

               Conread position:
               220-412
               

               Cow position:
               chr11:50152616-50152813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               220-415
               

               Cow position:
               chr11:20561792-20561996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               220-415
               

               Cow position:
               chr11:81167832-81168029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               61, 150
               

               Conread position:
               220-417
               

               Cow position:
               chr11:86895569-86895372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               61, 13
               

               Conread position:
               220-425
               

               Cow position:
               chr11:26143900-26144108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               61, 48
               

               Conread position:
               220-439
               

               Cow position:
               chr11:3715021-3714797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               61, 206
               

               Conread position:
               221-365
               

               Cow position:
               chr11:65939664-65939815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               221-377
               

               Cow position:
               chr11:28078687-28078529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               221-409
               

               Cow position:
               chr11:42786484-42786684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               58, 183
               

               Conread position:
               221-410
               

               Cow position:
               chr11:10066547-10066351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               60, 49
               

               Conread position:
               221-415
               

               Cow position:
               chr11:33414426-33414234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               221-415
               

               Cow position:
               chr11:83398107-83397903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               221-417
               

               Cow position:
               chr11:18508830-18509035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               221-422
               

               Cow position:
               chr11:6399865-6400073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 150
               

               Conread position:
               221-422
               

               Cow position:
               chr11:32126818-32126602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               221-425
               

               Cow position:
               chr11:17517597-17517386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               60, 46
               

               Conread position:
               222-351
               

               Cow position:
               chr11:85262713-85262578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               222-393
               

               Cow position:
               chr11:36182887-36182714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               222-401
               

               Cow position:
               chr11:30894803-30894992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               222-405
               

               Cow position:
               chr11:21590584-21590392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               57, 17
               

               Conread position:
               222-410
               

               Cow position:
               chr11:36112607-36112422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               10, 47
               

               Conread position:
               222-410
               

               Cow position:
               chr11:45631582-45631763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               29, 86
               

               Conread position:
               222-412
               

               Cow position:
               chr11:47725083-47724899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               222-412
               

               Cow position:
               chr11:83043172-83043362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               59, 19
               

               Conread position:
               222-415
               

               Cow position:
               chr11:27343469-27343268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               222-415
               

               Cow position:
               chr11:32254016-32254219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               222-417
               

               Cow position:
               chr11:37335909-37336093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               93, 19
               

               Conread position:
               222-417
               

               Cow position:
               chr11:67537919-67538122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               222-419
               

               Cow position:
               chr11:32782678-32782890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               59, 12
               

               Conread position:
               222-419
               

               Cow position:
               chr11:70422398-70422600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               222-424
               

               Cow position:
               chr11:15772518-15772723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               169
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               59, 19
               

               Conread position:
               222-425
               

               Cow position:
               chr11:23518418-23518633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               222-426
               

               Cow position:
               chr11:33971604-33971817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               222-426
               

               Cow position:
               chr11:75479823-75480033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               26, 163
               

               Conread position:
               223-310
               

               Cow position:
               chr11:34573038-34573127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               90
               

               Alignm identity:
               79
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               223-315
               

               Cow position:
               chr11:68909338-68909430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               84
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               223-332
               

               Cow position:
               chr11:7615984-7616095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               91
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               223-339
               

               Cow position:
               chr11:68870469-68870587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-348
               

               Cow position:
               chr11:70273655-70273525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-353
               

               Cow position:
               chr11:30528799-30528658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               223-377
               

               Cow position:
               chr11:1265347-1265508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               223-378
               

               Cow position:
               chr11:8828206-8828040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-378
               

               Cow position:
               chr11:24551588-24551425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               14, 150
               

               Conread position:
               223-383
               

               Cow position:
               chr11:18484006-18484159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               223-388
               

               Cow position:
               chr11:62102250-62102423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-388
               

               Cow position:
               chr11:75915180-75915018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               223-391
               

               Cow position:
               chr11:46010064-46010232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               86, 16
               

               Conread position:
               223-393
               

               Cow position:
               chr11:48296218-48296050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               91, 10
               

               Conread position:
               223-394
               

               Cow position:
               chr11:6245517-6245333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-394
               

               Cow position:
               chr11:8421931-8422099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               223-394
               

               Cow position:
               chr11:81175794-81175615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-397
               

               Cow position:
               chr11:49057579-49057407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               58, 79
               

               Conread position:
               223-398
               

               Cow position:
               chr11:15591286-15591460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-399
               

               Cow position:
               chr11:35732886-35733070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               223-401
               

               Cow position:
               chr11:71814896-71814718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               223-402
               

               Cow position:
               chr11:68570186-68570370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               223-404
               

               Cow position:
               chr11:30172494-30172313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               223-405
               

               Cow position:
               chr11:70756670-70756485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-406
               

               Cow position:
               chr11:62483780-62483955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-407
               

               Cow position:
               chr11:63849754-63849946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-408
               

               Cow position:
               chr11:8670213-8670016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-408
               

               Cow position:
               chr11:26442308-26442500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               223-408
               

               Cow position:
               chr11:77013968-77013785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               223-409
               

               Cow position:
               chr11:34778248-34778440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               223-410
               

               Cow position:
               chr11:25721809-25721993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               58, 47
               

               Conread position:
               223-410
               

               Cow position:
               chr11:64105189-64105001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               62, 96
               

               Conread position:
               223-410
               

               Cow position:
               chr11:81065851-81066047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               223-411
               

               Cow position:
               chr11:40794151-40794350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               223-411
               

               Cow position:
               chr11:44620149-44619956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               223-411
               

               Cow position:
               chr11:52690329-52690518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               82, 110
               

               Conread position:
               223-412
               

               Cow position:
               chr11:3728683-3728486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               6, 182
               

               Conread position:
               223-412
               

               Cow position:
               chr11:3896504-3896700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-412
               

               Cow position:
               chr11:18915204-18915027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               58, 15
               

               Conread position:
               223-412
               

               Cow position:
               chr11:25968657-25968852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               161
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               57, 161
               

               Conread position:
               223-412
               

               Cow position:
               chr11:42206610-42206422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-412
               

               Cow position:
               chr11:46499187-46499011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-412
               

               Cow position:
               chr11:55053058-55052872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               223-412
               

               Cow position:
               chr11:62239937-62239745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               59, 75
               

               Conread position:
               223-412
               

               Cow position:
               chr11:71492669-71492861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 17
               

               Conread position:
               223-412
               

               Cow position:
               chr11:77227723-77227539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               223-412
               

               Cow position:
               chr11:84385444-84385638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               223-414
               

               Cow position:
               chr11:35562917-35562718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               223-415
               

               Cow position:
               chr11:7460433-7460617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               6, 33
               

               Conread position:
               223-415
               

               Cow position:
               chr11:17559311-17559128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               223-415
               

               Cow position:
               chr11:29308778-29308578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-415
               

               Cow position:
               chr11:35769084-35768883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               223-415
               

               Cow position:
               chr11:36914368-36914569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               6, 91
               

               Conread position:
               223-415
               

               Cow position:
               chr11:37435790-37435990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               29, 49
               

               Conread position:
               223-415
               

               Cow position:
               chr11:40516918-40517118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               12, 174
               

               Conread position:
               223-415
               

               Cow position:
               chr11:42016444-42016641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               223-415
               

               Cow position:
               chr11:54428816-54428617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               58, 195
               

               Conread position:
               223-415
               

               Cow position:
               chr11:61675659-61675466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               223-415
               

               Cow position:
               chr11:67572068-67571870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               223-415
               

               Cow position:
               chr11:81300424-81300623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 125
               

               Conread position:
               223-416
               

               Cow position:
               chr11:23220556-23220358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               159
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               223-416
               

               Cow position:
               chr11:27661595-27661412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               58, 47
               

               Conread position:
               223-416
               

               Cow position:
               chr11:80893979-80893776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:1980069-1980272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:16315070-16314868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:20205664-20205856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               60, 18
               

               Conread position:
               223-417
               

               Cow position:
               chr11:20238873-20238672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:23407659-23407460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:27913481-27913280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               223-417
               

               Cow position:
               chr11:31228147-31227958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               91, 18
               

               Conread position:
               223-417
               

               Cow position:
               chr11:32260728-32260529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               24, 138
               

               Conread position:
               223-417
               

               Cow position:
               chr11:39060411-39060606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-417
               

               Cow position:
               chr11:44032200-44032007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-417
               

               Cow position:
               chr11:45742568-45742373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               20, 55
               

               Conread position:
               223-417
               

               Cow position:
               chr11:57767386-57767186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               18, 178
               

               Conread position:
               223-417
               

               Cow position:
               chr11:62620573-62620372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               223-417
               

               Cow position:
               chr11:71022195-71021996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               55, 10
               

               Conread position:
               223-417
               

               Cow position:
               chr11:76890240-76890041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               223-417
               

               Cow position:
               chr11:78820350-78820147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               29, 125
               

               Conread position:
               223-418
               

               Cow position:
               chr11:36058995-36058791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               223-419
               

               Cow position:
               chr11:57331980-57331795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               58, 88
               

               Conread position:
               223-419
               

               Cow position:
               chr11:57503677-57503476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               223-420
               

               Cow position:
               chr11:7571817-7571617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               223-422
               

               Cow position:
               chr11:36136303-36136098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               223-422
               

               Cow position:
               chr11:58048527-58048319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-423
               

               Cow position:
               chr11:49210620-49210832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               18, 123
               

               Conread position:
               223-425
               

               Cow position:
               chr11:33348003-33348199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               223-425
               

               Cow position:
               chr11:37099978-37100181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               223-425
               

               Cow position:
               chr11:45619546-45619340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               223-426
               

               Cow position:
               chr11:15366782-15366986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               162
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               57, 86
               

               Conread position:
               223-426
               

               Cow position:
               chr11:15369588-15369374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               223-426
               

               Cow position:
               chr11:25604151-25603934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               223-434
               

               Cow position:
               chr11:26117543-26117743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               223-436
               

               Cow position:
               chr11:30165707-30165486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               223-436
               

               Cow position:
               chr11:46884576-46884348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               223-439
               

               Cow position:
               chr11:17889530-17889759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               223-445
               

               Cow position:
               chr11:41980005-41980236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 47
               

               Conread position:
               223-539
               

               Cow position:
               chr11:13500206-13499879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               58, 40
               

               Conread position:
               224-374
               

               Cow position:
               chr11:26823308-26823148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               224-406
               

               Cow position:
               chr11:27747113-27746930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               224-411
               

               Cow position:
               chr11:81143348-81143541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               224-417
               

               Cow position:
               chr11:46747660-46747865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               224-417
               

               Cow position:
               chr11:55334110-55333905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               56, 10
               

               Conread position:
               224-420
               

               Cow position:
               chr11:66099662-66099870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               224-422
               

               Cow position:
               chr11:2874599-2874388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               225-395
               

               Cow position:
               chr11:58575201-58575373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               8, 107
               

               Conread position:
               225-397
               

               Cow position:
               chr11:30986828-30986654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               225-401
               

               Cow position:
               chr11:75388181-75388363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               225-402
               

               Cow position:
               chr11:13404858-13405022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               225-412
               

               Cow position:
               chr11:9836261-9836456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               225-417
               

               Cow position:
               chr11:19946615-19946431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               35, 43
               

               Conread position:
               226-379
               

               Cow position:
               chr11:57170417-57170565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               53, 82
               

               Conread position:
               226-391
               

               Cow position:
               chr11:43641580-43641408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               226-397
               

               Cow position:
               chr11:7617014-7617191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               226-399
               

               Cow position:
               chr11:32800820-32800639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               226-400
               

               Cow position:
               chr11:26057454-26057638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               226-401
               

               Cow position:
               chr11:7651877-7652055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               226-406
               

               Cow position:
               chr11:1380870-1380682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               226-415
               

               Cow position:
               chr11:66041465-66041276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               159
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 88
               

               Conread position:
               226-415
               

               Cow position:
               chr11:71854089-71854281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               26, 140
               

               Conread position:
               226-417
               

               Cow position:
               chr11:62889699-62889898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               226-417
               

               Cow position:
               chr11:70206506-70206316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 8
               

               Conread position:
               226-417
               

               Cow position:
               chr11:76835445-76835629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 52
               

               Conread position:
               226-418
               

               Cow position:
               chr11:32653483-32653280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               226-420
               

               Cow position:
               chr11:41043097-41043286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               55, 87
               

               Conread position:
               226-430
               

               Cow position:
               chr11:84758018-84757818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               85, 44
               

               Conread position:
               226-431
               

               Cow position:
               chr11:19657022-19657232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               227-411
               

               Cow position:
               chr11:17036341-17036526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               54, 13
               

               Conread position:
               227-415
               

               Cow position:
               chr11:30708695-30708504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               54, 14
               

               Conread position:
               227-417
               

               Cow position:
               chr11:40792503-40792709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               227-419
               

               Cow position:
               chr11:64048582-64048397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               54, 45
               

               Conread position:
               227-425
               

               Cow position:
               chr11:20234879-20234672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               227-425
               

               Cow position:
               chr11:58102567-58102774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               73, 20
               

               Conread position:
               227-428
               

               Cow position:
               chr11:60296930-60296715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               53, 179
               

               Conread position:
               228-341
               

               Cow position:
               chr11:48383721-48383607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               53, 101
               

               Conread position:
               228-378
               

               Cow position:
               chr11:2310259-2310110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               16, 86
               

               Conread position:
               228-383
               

               Cow position:
               chr11:18574663-18574826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               228-383
               

               Cow position:
               chr11:33271620-33271460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-393
               

               Cow position:
               chr11:65495155-65495320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               228-394
               

               Cow position:
               chr11:76896182-76896356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               228-394
               

               Cow position:
               chr11:82732965-82733131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               228-399
               

               Cow position:
               chr11:59471295-59471115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-407
               

               Cow position:
               chr11:35924253-35924066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               55, 61
               

               Conread position:
               228-407
               

               Cow position:
               chr11:44176786-44176602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               13, 52
               

               Conread position:
               228-408
               

               Cow position:
               chr11:74152557-74152750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               228-409
               

               Cow position:
               chr11:14470552-14470369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               228-409
               

               Cow position:
               chr11:41239000-41239187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               228-410
               

               Cow position:
               chr11:30192371-30192181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               228-411
               

               Cow position:
               chr11:17676184-17676371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-411
               

               Cow position:
               chr11:25620200-25620388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               228-411
               

               Cow position:
               chr11:70600636-70600827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-412
               

               Cow position:
               chr11:8496224-8496033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               57, 128
               

               Conread position:
               228-412
               

               Cow position:
               chr11:45671188-45671369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               19, 75
               

               Conread position:
               228-412
               

               Cow position:
               chr11:46922696-46922885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-412
               

               Cow position:
               chr11:48672905-48672713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 16
               

               Conread position:
               228-412
               

               Cow position:
               chr11:59024162-59024359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 161
               

               Conread position:
               228-413
               

               Cow position:
               chr11:67614734-67614922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               53, 99
               

               Conread position:
               228-415
               

               Cow position:
               chr11:5075039-5075230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               53, 85
               

               Conread position:
               228-415
               

               Cow position:
               chr11:34616452-34616256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               228-415
               

               Cow position:
               chr11:34968422-34968616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               52, 150
               

               Conread position:
               228-415
               

               Cow position:
               chr11:35444236-35444042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               53, 85
               

               Conread position:
               228-415
               

               Cow position:
               chr11:35924047-35923852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               228-415
               

               Cow position:
               chr11:36977998-36977804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               52, 177
               

               Conread position:
               228-415
               

               Cow position:
               chr11:55744660-55744465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-415
               

               Cow position:
               chr11:55972740-55972934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               228-415
               

               Cow position:
               chr11:59862401-59862205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-415
               

               Cow position:
               chr11:63975325-63975127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               228-415
               

               Cow position:
               chr11:64781279-64781084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-416
               

               Cow position:
               chr11:10095534-10095340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               228-417
               

               Cow position:
               chr11:41361-41173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               86, 51
               

               Conread position:
               228-417
               

               Cow position:
               chr11:897853-897669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               53, 13
               

               Conread position:
               228-417
               

               Cow position:
               chr11:7385625-7385435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               152
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               54, 122
               

               Conread position:
               228-417
               

               Cow position:
               chr11:25783905-25783708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               52, 17
               

               Conread position:
               228-417
               

               Cow position:
               chr11:27461921-27462102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               51, 12
               

               Conread position:
               228-417
               

               Cow position:
               chr11:40395626-40395435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               228-417
               

               Cow position:
               chr11:47837510-47837315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               74, 45
               

               Conread position:
               228-417
               

               Cow position:
               chr11:49153130-49152945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               228-419
               

               Cow position:
               chr11:1485043-1485233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               158
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               52, 82
               

               Conread position:
               228-419
               

               Cow position:
               chr11:33002158-33001958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-419
               

               Cow position:
               chr11:81138403-81138205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               48, 156
               

               Conread position:
               228-426
               

               Cow position:
               chr11:51846488-51846284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               228-443
               

               Cow position:
               chr11:81614333-81614545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               194, 46
               

               Conread position:
               228-445
               

               Cow position:
               chr11:4382065-4382276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               228-487
               

               Cow position:
               chr11:4363721-4363989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               33, 169
               

               Conread position:
               228-539
               

               Cow position:
               chr11:40459296-40458978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               229-360
               

               Cow position:
               chr11:68592209-68592070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-401
               

               Cow position:
               chr11:40818444-40818615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               229-405
               

               Cow position:
               chr11:41213242-41213056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-408
               

               Cow position:
               chr11:13940377-13940190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               54, 63
               

               Conread position:
               229-410
               

               Cow position:
               chr11:73940373-73940561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               229-411
               

               Cow position:
               chr11:40538738-40538552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               52, 10
               

               Conread position:
               229-412
               

               Cow position:
               chr11:19578832-19579015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               151
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               84, 114
               

               Conread position:
               229-412
               

               Cow position:
               chr11:42159871-42160053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               19, 42
               

               Conread position:
               229-412
               

               Cow position:
               chr11:47412032-47411840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-412
               

               Cow position:
               chr11:49872698-49872884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 10
               

               Conread position:
               229-412
               

               Cow position:
               chr11:85186340-85186527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               54, 14
               

               Conread position:
               229-413
               

               Cow position:
               chr11:38226433-38226242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-414
               

               Cow position:
               chr11:58594196-58594389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-415
               

               Cow position:
               chr11:36940404-36940598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-415
               

               Cow position:
               chr11:45350320-45350514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               229-415
               

               Cow position:
               chr11:85571616-85571808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               53, 39
               

               Conread position:
               229-417
               

               Cow position:
               chr11:38211832-38211641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               12, 31
               

               Conread position:
               229-417
               

               Cow position:
               chr11:63382009-63382195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               229-417
               

               Cow position:
               chr11:66685722-66685910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 17
               

               Conread position:
               229-422
               

               Cow position:
               chr11:6581023-6580823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               230-392
               

               Cow position:
               chr11:80923136-80923303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 38
               

               Conread position:
               230-402
               

               Cow position:
               chr11:38223604-38223777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               51, 119
               

               Conread position:
               230-411
               

               Cow position:
               chr11:64335019-64334839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               51, 37
               

               Conread position:
               230-411
               

               Cow position:
               chr11:77241890-77241707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               230-412
               

               Cow position:
               chr11:48086105-48085919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               51, 11
               

               Conread position:
               230-412
               

               Cow position:
               chr11:67600966-67600785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               230-412
               

               Cow position:
               chr11:79548743-79548937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               230-415
               

               Cow position:
               chr11:4636986-4637174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               230-415
               

               Cow position:
               chr11:72443302-72443110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               48, 9
               

               Conread position:
               230-416
               

               Cow position:
               chr11:49207901-49207707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 168
               

               Conread position:
               230-417
               

               Cow position:
               chr11:9270548-9270729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               230-417
               

               Cow position:
               chr11:13042959-13043150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               158
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               230-417
               

               Cow position:
               chr11:35669779-35669956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               83, 11
               

               Conread position:
               230-417
               

               Cow position:
               chr11:68326674-68326868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               230-417
               

               Cow position:
               chr11:70978548-70978738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               230-422
               

               Cow position:
               chr11:80296671-80296862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               230-425
               

               Cow position:
               chr11:66188131-66188329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               230-435
               

               Cow position:
               chr11:10563193-10562984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               230-494
               

               Cow position:
               chr11:9279619-9279354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               44, 11
               

               Conread position:
               230-539
               

               Cow position:
               chr11:64101960-64101640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               51, 11
               

               Conread position:
               231-365
               

               Cow position:
               chr11:6154757-6154618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               231-375
               

               Cow position:
               chr11:41133892-41134042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               231-384
               

               Cow position:
               chr11:44016433-44016272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               231-393
               

               Cow position:
               chr11:50629458-50629296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               48, 24
               

               Conread position:
               231-393
               

               Cow position:
               chr11:84968554-84968397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               16, 40
               

               Conread position:
               231-397
               

               Cow position:
               chr11:63484126-63483958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 7
               

               Conread position:
               231-398
               

               Cow position:
               chr11:36847357-36847182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               231-400
               

               Cow position:
               chr11:17278496-17278663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               20, 38
               

               Conread position:
               231-410
               

               Cow position:
               chr11:5433454-5433273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               231-411
               

               Cow position:
               chr11:55762044-55761870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               50, 19
               

               Conread position:
               231-415
               

               Cow position:
               chr11:5417074-5416882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               231-415
               

               Cow position:
               chr11:65858251-65858080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 69
               

               Conread position:
               231-416
               

               Cow position:
               chr11:5418072-5418258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               48, 72
               

               Conread position:
               231-416
               

               Cow position:
               chr11:19487291-19487484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               231-416
               

               Cow position:
               chr11:35347563-35347756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               231-417
               

               Cow position:
               chr11:49149233-49149044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               50, 15
               

               Conread position:
               231-417
               

               Cow position:
               chr11:53778807-53778612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               50, 8
               

               Conread position:
               231-417
               

               Cow position:
               chr11:70483664-70483856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 8
               

               Conread position:
               231-418
               

               Cow position:
               chr11:11994525-11994712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               50, 11
               

               Conread position:
               231-419
               

               Cow position:
               chr11:33368259-33368076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               49, 36
               

               Conread position:
               231-420
               

               Cow position:
               chr11:63485121-63484928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               163
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 85
               

               Conread position:
               231-422
               

               Cow position:
               chr11:37989435-37989631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               231-425
               

               Cow position:
               chr11:42884597-42884798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               48, 158
               

               Conread position:
               231-426
               

               Cow position:
               chr11:19591808-19592008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               50, 36
               

               Conread position:
               232-411
               

               Cow position:
               chr11:17227464-17227642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               49, 82
               

               Conread position:
               232-411
               

               Cow position:
               chr11:62812767-62812948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               232-418
               

               Cow position:
               chr11:17721613-17721807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               232-418
               

               Cow position:
               chr11:65826566-65826756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 36
               

               Conread position:
               233-374
               

               Cow position:
               chr11:3267484-3267617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               48, 8
               

               Conread position:
               233-394
               

               Cow position:
               chr11:37565055-37564892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               233-407
               

               Cow position:
               chr11:5176195-5176371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               233-412
               

               Cow position:
               chr11:17083127-17083309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               233-417
               

               Cow position:
               chr11:74316892-74316705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               233-417
               

               Cow position:
               chr11:83032863-83032676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               233-419
               

               Cow position:
               chr11:70458230-70458035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               48, 109
               

               Conread position:
               233-425
               

               Cow position:
               chr11:27907956-27907768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               46, 118
               

               Conread position:
               234-377
               

               Cow position:
               chr11:86925779-86925925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               47, 20
               

               Conread position:
               234-395
               

               Cow position:
               chr11:32108503-32108671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               234-400
               

               Cow position:
               chr11:21843953-21844124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               17, 130
               

               Conread position:
               234-400
               

               Cow position:
               chr11:72401550-72401720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               234-404
               

               Cow position:
               chr11:69696761-69696929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               12, 80
               

               Conread position:
               234-411
               

               Cow position:
               chr11:46427222-46427406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               234-415
               

               Cow position:
               chr11:84977190-84977361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               118, 11
               

               Conread position:
               234-417
               

               Cow position:
               chr11:17859968-17860160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               47, 123
               

               Conread position:
               234-417
               

               Cow position:
               chr11:21852130-21852306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               14, 78
               

               Conread position:
               234-417
               

               Cow position:
               chr11:41313476-41313661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               13, 41
               

               Conread position:
               234-417
               

               Cow position:
               chr11:51729460-51729282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               14, 68
               

               Conread position:
               234-422
               

               Cow position:
               chr11:6006494-6006303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               47, 161
               

               Conread position:
               234-425
               

               Cow position:
               chr11:67312970-67312768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               235-397
               

               Cow position:
               chr11:62663059-62663219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 20
               

               Conread position:
               235-417
               

               Cow position:
               chr11:17074045-17074223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 5
               

               Conread position:
               235-434
               

               Cow position:
               chr11:77758577-77758781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               46, 60
               

               Conread position:
               236-416
               

               Cow position:
               chr11:64022926-64023103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               10, 104
               

               Conread position:
               237-426
               

               Cow position:
               chr11:5467263-5467068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               237-426
               

               Cow position:
               chr11:35980959-35981155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               44, 131
               

               Conread position:
               238-411
               

               Cow position:
               chr11:45435256-45435082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               75, 44
               

               Conread position:
               239-374
               

               Cow position:
               chr11:21322325-21322456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               44, 74
               

               Conread position:
               239-392
               

               Cow position:
               chr11:67208429-67208273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               68, 41
               

               Conread position:
               239-393
               

               Cow position:
               chr11:17552899-17553061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               43, 109
               

               Conread position:
               239-394
               

               Cow position:
               chr11:83028172-83028012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               75, 43
               

               Conread position:
               239-400
               

               Cow position:
               chr11:63407874-63407708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               68, 148
               

               Conread position:
               239-410
               

               Cow position:
               chr11:2327869-2327688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               239-410
               

               Cow position:
               chr11:7500929-7500751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               239-410
               

               Cow position:
               chr11:68660434-68660612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               239-410
               

               Cow position:
               chr11:78380889-78381062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               239-411
               

               Cow position:
               chr11:36300404-36300576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               42, 28
               

               Conread position:
               239-411
               

               Cow position:
               chr11:56288725-56288549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 156
               

               Conread position:
               239-412
               

               Cow position:
               chr11:53817035-53816853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               239-412
               

               Cow position:
               chr11:67948577-67948741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               239-416
               

               Cow position:
               chr11:63065832-63065649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               239-416
               

               Cow position:
               chr11:79666082-79666265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               41, 31
               

               Conread position:
               239-417
               

               Cow position:
               chr11:5486196-5486009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               239-417
               

               Cow position:
               chr11:18447321-18447496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 74
               

               Conread position:
               239-417
               

               Cow position:
               chr11:29786313-29786503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               239-417
               

               Cow position:
               chr11:33409086-33409266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               42, 28
               

               Conread position:
               239-417
               

               Cow position:
               chr11:56406854-56406672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               239-417
               

               Cow position:
               chr11:66939411-66939597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               239-417
               

               Cow position:
               chr11:68913323-68913136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               239-419
               

               Cow position:
               chr11:3797884-3797711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               239-419
               

               Cow position:
               chr11:21124429-21124613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               41, 162
               

               Conread position:
               239-420
               

               Cow position:
               chr11:55398971-55399159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               239-422
               

               Cow position:
               chr11:5264276-5264087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               42, 31
               

               Conread position:
               239-425
               

               Cow position:
               chr11:19247025-19247211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               150
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               77, 160
               

               Conread position:
               239-425
               

               Cow position:
               chr11:31537268-31537452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               42, 80
               

               Conread position:
               239-425
               

               Cow position:
               chr11:42084493-42084688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               239-434
               

               Cow position:
               chr11:42064044-42064245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 116
               

               Conread position:
               239-451
               

               Cow position:
               chr11:42065832-42065610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               42, 187
               

               Conread position:
               240-412
               

               Cow position:
               chr11:43360608-43360781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               41, 87
               

               Conread position:
               240-415
               

               Cow position:
               chr11:60486237-60486421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               241-417
               

               Cow position:
               chr11:64029089-64029267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               40, 100
               

               Conread position:
               241-417
               

               Cow position:
               chr11:81405989-81406173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               40, 94
               

               Conread position:
               242-400
               

               Cow position:
               chr11:37042151-37041984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               242-536
               

               Cow position:
               chr11:38639276-38638984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               41, 73
               
UCSC Genome Browser
               Conread position:
               243-417
               

               Cow position:
               chr11:7874316-7874134 (view  custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               38, 0
               
UCSC Genome Browser
               
               
               
Conread position: 243-417

               
               
               
Cow position: chr11:36920402-36920582 (view  custom track)

               
               
               
Alignm length: 185

               
               
               
Alignm identity: 150

               
               
               
Alignm E-value: 3e-35

               
               
               
Alignm gaps (pig, cow): 38, 27
UCSC Genome Browser
               
               
               
Conread position: 243-417

               
               
               
Cow position: chr11:60720278-60720460 (view  custom track)

               
               
               
Alignm length: 183

               
               
               
Alignm identity: 152

               
               
               
Alignm E-value: 7.00649e-43

               
               
               
Alignm gaps (pig, cow): 38, 0

               
               
               Conread position:244-373
               
               
               Cow position:chr11:25751043-25750916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:244-398
               
               
               Cow position:chr11:46314188-46314025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:244-412
               
               
               Cow position:chr11:23271831-23272003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:244-415
               
               
               Cow position:chr11:30209648-30209822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:244-424
               
               
               Cow position:chr11:80586441-80586263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:244-425
               
               
               Cow position:chr11:13592914-13592723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:245-379
               
               
               Cow position:chr11:12742320-12742457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:245-382
               
               
               Cow position:chr11:1842131-1841994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:245-409
               
               
               Cow position:chr11:66104219-66104392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:245-411
               
               
               Cow position:chr11:40608419-40608592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:245-412
               
               
               Cow position:chr11:30830449-30830613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:245-412
               
               
               Cow position:chr11:30842851-30843018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:245-415
               
               
               Cow position:chr11:41215907-41215730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-417
               
               
               Cow position:chr11:71390400-71390565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:245-417
               
               
               Cow position:chr11:80412835-80413017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:245-419
               
               
               Cow position:chr11:35109366-35109544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:245-423
               
               
               Cow position:chr11:48544610-48544426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:245-425
               
               
               Cow position:chr11:63498957-63499140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:245-438
               
               
               Cow position:chr11:65157231-65157430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 174

               
               
               Conread position:246-355
               
               
               Cow position:chr11:56749048-56749159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:246-400
               
               
               Cow position:chr11:25119763-25119919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:246-426
               
               
               Cow position:chr11:32353813-32353999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:247-375
               
               
               Cow position:chr11:2830828-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:247-402
               
               
               Cow position:chr11:21736139-21736288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:247-404
               
               
               Cow position:chr11:6194560-6194407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:247-408
               
               
               Cow position:chr11:26343274-26343106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-411
               
               
               Cow position:chr11:34644830-34644656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-412
               
               
               Cow position:chr11:22884578-22884414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:247-413
               
               
               Cow position:chr11:30654820-30654655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:247-416
               
               
               Cow position:chr11:3740136-3739950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr11:8988058-8988234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:247-417
               
               
               Cow position:chr11:30867349-30867179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:247-417
               
               
               Cow position:chr11:57608294-57608460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:247-417
               
               
               Cow position:chr11:84890556-84890721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:247-418
               
               
               Cow position:chr11:29677379-29677201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-420
               
               
               Cow position:chr11:9237676-9237854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:247-425
               
               
               Cow position:chr11:48474881-48474691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:247-431
               
               
               Cow position:chr11:64103879-64104065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-434
               
               
               Cow position:chr11:68883892-68883696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-439
               
               
               Cow position:chr11:21173265-21173462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:247-516
               
               
               Cow position:chr11:48660102-48659831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 198

               
               
               Conread position:248-411
               
               
               Cow position:chr11:44017155-44016976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:248-416
               
               
               Cow position:chr11:35926738-35926911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:248-417
               
               
               Cow position:chr11:39854851-39855021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:250-353
               
               
               Cow position:chr11:67417978-67417868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-365
               
               
               Cow position:chr11:899605-899481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-379
               
               
               Cow position:chr11:34144750-34144891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:250-400
               
               
               Cow position:chr11:1142685-1142825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:250-400
               
               
               Cow position:chr11:55117612-55117457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:250-405
               
               
               Cow position:chr11:53486991-53487144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:250-409
               
               
               Cow position:chr11:30600021-30600188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-412
               
               
               Cow position:chr11:42296458-42296619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:250-412
               
               
               Cow position:chr11:77319581-77319415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-415
               
               
               Cow position:chr11:6296909-6297082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-415
               
               
               Cow position:chr11:7560170-7559997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-415
               
               
               Cow position:chr11:85191448-85191613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 148

               
               
               Conread position:250-416
               
               
               Cow position:chr11:30728570-30728397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:250-417
               
               
               Cow position:chr11:2836029-2835854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr11:18543352-18543510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:250-417
               
               
               Cow position:chr11:26632844-26633018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:250-417
               
               
               Cow position:chr11:27760687-27760513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:250-417
               
               
               Cow position:chr11:28993579-28993742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:250-417
               
               
               Cow position:chr11:68904919-68905081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:250-419
               
               
               Cow position:chr11:41985879-41986052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-422
               
               
               Cow position:chr11:14875599-14875779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:250-422
               
               
               Cow position:chr11:39554020-39554201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:250-425
               
               
               Cow position:chr11:26535953-26535775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:250-425
               
               
               Cow position:chr11:34467731-34467558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:250-425
               
               
               Cow position:chr11:62742479-62742655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 150

               
               
               Conread position:250-426
               
               
               Cow position:chr11:35149571-35149385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:250-433
               
               
               Cow position:chr11:29659728-29659537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:251-400
               
               
               Cow position:chr11:64409134-64408985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:251-417
               
               
               Cow position:chr11:4199442-4199267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:251-417
               
               
               Cow position:chr11:22977714-22977878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:251-417
               
               
               Cow position:chr11:53463110-53462938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:251-417
               
               
               Cow position:chr11:73353899-73354064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:252-395
               
               
               Cow position:chr11:63475504-63475655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:252-403
               
               
               Cow position:chr11:4411705-4411859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:252-407
               
               
               Cow position:chr11:78672838-78672676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:252-409
               
               
               Cow position:chr11:83066659-83066491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:252-412
               
               
               Cow position:chr11:84228556-84228717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-417
               
               
               Cow position:chr11:79707870-79707709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:253-412
               
               
               Cow position:chr11:76248212-76248050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:253-415
               
               
               Cow position:chr11:8683912-8684082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:254-425
               
               
               Cow position:chr11:18189584-18189748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:255-420
               
               
               Cow position:chr11:27449468-27449622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:255-481
               
               
               Cow position:chr11:78544449-78544215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 200

               
               
               Conread position:257-416
               
               
               Cow position:chr11:63202085-63202253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:258-433
               
               
               Cow position:chr11:8544855-8545037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:259-417
               
               
               Cow position:chr11:41281206-41281040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:260-394
               
               
               Cow position:chr11:62081813-62081949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:261-416
               
               
               Cow position:chr11:58927731-58927580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:262-417
               
               
               Cow position:chr11:9699047-9698895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:263-428
               
               
               Cow position:chr11:35140066-35139890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:264-416
               
               
               Cow position:chr11:52464560-52464406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:264-417
               
               
               Cow position:chr11:18791908-18792072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:266-412
               
               
               Cow position:chr11:11469500-11469647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:266-412
               
               
               Cow position:chr11:34136394-34136241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:267-417
               
               
               Cow position:chr11:31410728-31410882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:268-400
               
               
               Cow position:chr11:82940474-82940612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):6, 68

               
               
               Conread position:270-438
               
               
               Cow position:chr11:68206697-68206866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:271-519
               
               
               Cow position:chr11:71868455-71868713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 174

               
               
               Conread position:272-415
               
               
               Cow position:chr11:6320223-6320371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:273-417
               
               
               Cow position:chr11:4662908-4663051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:273-424
               
               
               Cow position:chr11:21468838-21468686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:274-417
               
               
               Cow position:chr11:20602363-20602223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:279-411
               
               
               Cow position:chr11:61178491-61178359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:279-411
               
               
               Cow position:chr11:69139817-69139948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:279-417
               
               
               Cow position:chr11:34113401-34113260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:280-408
               
               
               Cow position:chr11:38202109-38201974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:280-519
               
               
               Cow position:chr11:32436476-32436224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:282-417
               
               
               Cow position:chr11:2344388-2344246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:283-424
               
               
               Cow position:chr11:79869465-79869314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:284-433
               
               
               Cow position:chr11:54334456-54334306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:292-419
               
               
               Cow position:chr11:33697755-33697635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:297-417
               
               
               Cow position:chr11:32615855-32615731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:300-425
               
               
               Cow position:chr11:68173646-68173519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:301-402
               
               
               Cow position:chr11:78780746-78780848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:301-412
               
               
               Cow position:chr11:40478742-40478852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-412
               
               
               Cow position:chr11:59916258-59916146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:301-417
               
               
               Cow position:chr11:5789787-5789904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:301-417
               
               
               Cow position:chr11:30925265-30925152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:301-417
               
               
               Cow position:chr11:61958630-61958748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:301-417
               
               
               Cow position:chr11:62168219-62168335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:301-417
               
               
               Cow position:chr11:71767712-71767597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-419
               
               
               Cow position:chr11:17831112-17831227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-420
               
               
               Cow position:chr11:37982465-37982585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:301-426
               
               
               Cow position:chr11:62778552-62778429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-427
               
               
               Cow position:chr11:70826059-70825934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:301-514
               
               
               Cow position:chr11:48650085-48649872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:302-400
               
               
               Cow position:chr11:34623282-34623183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:302-408
               
               
               Cow position:chr11:46333585-46333478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:302-425
               
               
               Cow position:chr11:62808395-62808518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:302-425
               
               
               Cow position:chr11:69415487-69415609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:303-417
               
               
               Cow position:chr11:72333699-72333584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:305-417
               
               
               Cow position:chr11:15682873-15682984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:306-417
               
               
               Cow position:chr11:21910522-21910631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:307-412
               
               
               Cow position:chr11:62728680-62728575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:309-426
               
               
               Cow position:chr11:48232930-48232814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:311-420
               
               
               Cow position:chr11:33345547-33345438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-417
               
               
               Cow position:chr11:64351690-64351795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:312-418
               
               
               Cow position:chr11:36799207-36799312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:317-411
               
               
               Cow position:chr11:46452231-46452137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:626-750
               
               
               Cow position:chr11:53280036-53280156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:663-750
               
               
               Cow position:chr11:19099160-19099245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:663-750
               
               
               Cow position:chr11:19507659-19507570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0
Show alignments to all cow chromosomes.
Conread position:	182-384
Cow position:	chr11:51683454-51683244 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	160
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	40, 0
Conread position:	186-415
Cow position:	chr11:29954601-29954369 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	156
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	49, 10
Conread position:	191-425
Cow position:	chr11:36361414-36361657 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	170
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	90, 37
Conread position:	193-412
Cow position:	chr11:30322270-30322492 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	163
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	88, 40
Conread position:	195-362
Cow position:	chr11:13397293-13397457 (view UCSC Genome Browser custom track)
Alignm length:	171
Alignm identity:	130
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	86, 41
Conread position:	196-398
Cow position:	chr11:12350038-12350239 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	148
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	32, 73
Conread position:	196-409
Cow position:	chr11:68829841-68829623 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	153
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	83, 42
Conread position:	196-415
Cow position:	chr11:9699032-9699247 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	168
Alignm E-value:	4e-38
Alignm gaps (pig, cow):	44, 14
Conread position:	196-416
Cow position:	chr11:75749684-75749476 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	175
Alignm E-value:	5e-40
Alignm gaps (pig, cow):	85, 24
Conread position:	196-427
Cow position:	chr11:52179572-52179347 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	164
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	83, 46
Conread position:	197-415
Cow position:	chr11:27514662-27514879 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	154
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	17, 30
Conread position:	197-417
Cow position:	chr11:5961531-5961301 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	161
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	39, 21
Conread position:	197-419
Cow position:	chr11:58173840-58173619 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	161
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	5, 23
Conread position:	197-421
Cow position:	chr11:45276927-45277157 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	167
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	34, 23
Conread position:	198-392
Cow position:	chr11:71303798-71303599 (view UCSC Genome Browser custom track)
Alignm length:	202
Alignm identity:	146
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	83, 12
Conread position:	199-412
Cow position:	chr11:63435743-63435522 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	171
Alignm E-value:	5e-40
Alignm gaps (pig, cow):	50, 208
Conread position:	201-426
Cow position:	chr11:87171854-87172090 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	178
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	13, 28
Conread position:	202-439
Cow position:	chr11:38236464-38236223 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	179
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	12, 113
Conread position:	203-326
Cow position:	chr11:46335064-46334944 (view UCSC Genome Browser custom track)
Alignm length:	125
Alignm identity:	104
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	77, 16
Conread position:	203-405
Cow position:	chr11:62606634-62606424 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	152
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	16, 37