Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-385 |
| Cow position: | chr13:56292158-56291773 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 369 |
| Conread position: | 1-613 |
| Cow position: | chr13:22125305-22125917 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 344 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 251, 264 |
| Conread position: | 1-641 |
| Cow position: | chr13:22125053-22125693 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 381 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 1-642 |
| Cow position: | chr13:24162779-24163420 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 1-675 |
| Cow position: | chr13:24162695-24163369 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 122 |
| Conread position: | 1-681 |
| Cow position: | chr13:24162611-24163291 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 399 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 1-682 |
| Cow position: | chr13:56333504-56334194 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 83 |
| Conread position: | 2-491 |
| Cow position: | chr13:39930689-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 2-681 |
| Cow position: | chr13:22124886-22125565 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 396 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-553 |
| Cow position: | chr13:56292313-56291776 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 115 |
| Conread position: | 3-620 |
| Cow position: | chr13:56292403-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 207 |
| Conread position: | 3-660 |
| Cow position: | chr13:22124719-22125376 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 387 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 3-660 |
| Cow position: | chr13:24162445-24163102 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 389 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 3-684 |
| Cow position: | chr13:56292818-56292147 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 5-686 |
| Cow position: | chr13:22124973-22125654 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 118 |
| Conread position: | 11-418 |
| Cow position: | chr13:39984454-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 12-625 |
| Cow position: | chr13:39984287-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 579, 589 |
| Conread position: | 12-670 |
| Cow position: | chr13:39984035-39984693 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-670 |
| Cow position: | chr13:39984119-39984777 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 12-678 |
| Cow position: | chr13:22125148-22125814 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 386 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-682 |
| Cow position: | chr13:24162874-24163544 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 390 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-560 |
| Cow position: | chr13:39930617-39931161 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 19-670 |
| Cow position: | chr13:39983958-39984609 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 20-681 |
| Cow position: | chr13:56333607-56334277 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 22-641 |
| Cow position: | chr13:56333693-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 23-681 |
| Cow position: | chr13:22125243-22125901 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 381 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 550, 543 |
| Conread position: | 23-696 |
| Cow position: | chr13:24162969-24163644 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 393 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 550, 543 |
| Conread position: | 35-670 |
| Cow position: | chr13:39983890-39984525 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-670 |
| Cow position: | chr13:39984234-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 293 |
| Conread position: | 54-501 |
| Cow position: | chr13:56317356-56317796 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 87-684 |
| Cow position: | chr13:56292403-56291810 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 105 |
| Conread position: | 107-693 |
| Cow position: | chr13:22124739-22125325 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 348 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 351, 358 |
| Conread position: | 107-693 |
| Cow position: | chr13:24162465-24163051 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 354 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 358, 352 |
| Conread position: | 110-659 |
| Cow position: | chr13:39930629-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 0 |
| Conread position: | 139-661 |
| Cow position: | chr13:56292850-56292333 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 328 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 140-677 |
| Cow position: | chr13:22124688-22125225 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 395, 409 |
| Conread position: | 140-677 |
| Cow position: | chr13:24162414-24162951 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 324 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-686 |
| Cow position: | chr13:39930584-39931121 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-542 |
| Cow position: | chr13:56317910-56318287 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 105 |
| Conread position: | 224-684 |
| Cow position: | chr13:29183811-29183354 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 261-686 |
| Cow position: | chr13:56333512-56333937 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 183, 177 |
| Conread position: | 286-669 |
| Cow position: | chr13:39983889-39984272 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 315, 305 |
| Conread position: | 349-684 |
| Cow position: | chr13:24162455-24162790 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.