Cow genome map

Conread name: Ss1.1-rsug17_g7.5

Conread position: 1-388
Cow position:
Alignm length: 390
Alignm identity: 235
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 191, 186

Conread position: 1-422
Cow position:
Alignm length: 423
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 182

Conread position: 1-669
Cow position:
Alignm length: 672
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 1-670
Cow position:
Alignm length: 673
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 68

Conread position: 1-675
Cow position:
Alignm length: 679
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 170

Conread position: 1-677
Cow position:
Alignm length: 680
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 186

Conread position: 1-681
Cow position:
Alignm length: 682
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 514, 527

Conread position: 1-681
Cow position:
Alignm length: 683
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 136

Conread position: 2-676
Cow position:
Alignm length: 676
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 525

Conread position: 9-384
Cow position:
Alignm length: 378
Alignm identity: 235
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 183, 178

Conread position: 9-565
Cow position:
Alignm length: 560
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 329

Conread position: 9-672
Cow position:
Alignm length: 667
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 10

Conread position: 9-680
Cow position:
Alignm length: 683
Alignm identity: 418
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 86, 90

Conread position: 11-663
Cow position:
Alignm length: 655
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 429

Conread position: 11-669
Cow position:
Alignm length: 663
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 255

Conread position: 11-669
Cow position:
Alignm length: 663
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 254

Conread position: 11-669
Cow position:
Alignm length: 661
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 574, 588

Conread position: 11-670
Cow position:
Alignm length: 664
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 349

Conread position: 11-670
Cow position:
Alignm length: 663
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 418, 408

Conread position: 11-681
Cow position:
Alignm length: 675
Alignm identity: 399
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 167, 147

Conread position: 11-681
Cow position:
Alignm length: 676
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 85

Conread position: 12-402
Cow position:
Alignm length: 392
Alignm identity: 247
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 200, 380

Conread position: 12-473
Cow position:
Alignm length: 465
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 175

Conread position: 12-509
Cow position:
Alignm length: 501
Alignm identity: 304
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 194, 199

Conread position: 12-686
Cow position:
Alignm length: 677
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 167

Conread position: 13-519
Cow position:
Alignm length: 508
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 154

Conread position: 13-532
Cow position:
Alignm length: 523
Alignm identity: 315
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 155, 173

Conread position: 13-674
Cow position:
Alignm length: 662
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-676
Cow position:
Alignm length: 666
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 174

Conread position: 14-496
Cow position:
Alignm length: 486
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 83

Conread position: 14-641
Cow position:
Alignm length: 631
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 514

Conread position: 14-669
Cow position:
Alignm length: 657
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 545, 0

Conread position: 14-673
Cow position:
Alignm length: 663
Alignm identity: 381
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 167, 155

Conread position: 14-673
Cow position:
Alignm length: 660
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-557
Cow position:
Alignm length: 544
Alignm identity: 334
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 363, 403

Conread position: 18-676
Cow position:
Alignm length: 665
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 183

Conread position: 20-593
Cow position:
Alignm length: 580
Alignm identity: 346
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 71, 59

Conread position: 20-669
Cow position:
Alignm length: 654
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 67

Conread position: 20-669
Cow position:
Alignm length: 657
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 68

Conread position: 20-669
Cow position:
Alignm length: 652
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 413

Conread position: 20-670
Cow position:
Alignm length: 655
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 25

Conread position: 21-663
Cow position:
Alignm length: 649
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 251

Conread position: 22-669
Cow position:
Alignm length: 648
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 22-676
Cow position:
Alignm length: 656
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 74

Conread position: 23-330
Cow position:
Alignm length: 308
Alignm identity: 193
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 23-411
Cow position:
Alignm length: 392
Alignm identity: 255
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 156, 169

Conread position: 23-495
Cow position:
Alignm length: 475
Alignm identity: 286
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 142, 166

Conread position: 23-625
Cow position:
Alignm length: 606
Alignm identity: 364
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 71, 76

Conread position: 23-633
Cow position:
Alignm length: 611
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-663
Cow position:
Alignm length: 644
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 165

Conread position: 23-669
Cow position:
Alignm length: 652
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 135

Conread position: 23-670
Cow position:
Alignm length: 653
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 135

Conread position: 23-670
Cow position:
Alignm length: 649
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 246

Conread position: 23-670
Cow position:
Alignm length: 650
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 337

Conread position: 23-670
Cow position:
Alignm length: 653
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 237

Conread position: 23-676
Cow position:
Alignm length: 655
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 505

Conread position: 23-676
Cow position:
Alignm length: 655
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 396

Conread position: 23-676
Cow position:
Alignm length: 655
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 82

Conread position: 23-677
Cow position:
Alignm length: 658
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 73

Conread position: 23-677
Cow position:
Alignm length: 659
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 136

Conread position: 23-681
Cow position:
Alignm length: 660
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 232

Conread position: 23-681
Cow position:
Alignm length: 661
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 237

Conread position: 23-682
Cow position:
Alignm length: 662
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 76

Conread position: 23-682
Cow position:
Alignm length: 661
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 239

Conread position: 23-682
Cow position:
Alignm length: 662
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 336

Conread position: 23-682
Cow position:
Alignm length: 664
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 244

Conread position: 23-682
Cow position:
Alignm length: 663
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 229

Conread position: 23-682
Cow position:
Alignm length: 662
Alignm identity: 390
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 171, 36

Conread position: 27-334
Cow position:
Alignm length: 310
Alignm identity: 200
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 155, 13

Conread position: 29-549
Cow position:
Alignm length: 525
Alignm identity: 321
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 78, 66

Conread position: 29-580
Cow position:
Alignm length: 555
Alignm identity: 339
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 161, 144

Conread position: 30-496
Cow position:
Alignm length: 468
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 328

Conread position: 32-681
Cow position:
Alignm length: 653
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 34-682
Cow position:
Alignm length: 653
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 304

Conread position: 35-670
Cow position:
Alignm length: 636
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 35-670
Cow position:
Alignm length: 639
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 137

Conread position: 35-677
Cow position:
Alignm length: 646
Alignm identity: 380
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 157, 151

Conread position: 39-669
Cow position:
Alignm length: 634
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 70

Conread position: 39-674
Cow position:
Alignm length: 639
Alignm identity: 381
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 213, 228

Conread position: 39-682
Cow position:
Alignm length: 646
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 285

Conread position: 39-682
Cow position:
Alignm length: 647
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 95

Conread position: 39-682
Cow position:
Alignm length: 645
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 464

Conread position: 41-502
Cow position:
Alignm length: 465
Alignm identity: 295
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 211, 228

Conread position: 41-658
Cow position:
Alignm length: 622
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 46

Conread position: 41-681
Cow position:
Alignm length: 644
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 59

Conread position: 41-681
Cow position:
Alignm length: 643
Alignm identity: 375
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 211, 224

Conread position: 41-682
Cow position:
Alignm length: 645
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 149

Conread position: 43-670
Cow position:
Alignm length: 633
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 219

Conread position: 43-670
Cow position:
Alignm length: 632
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 219

Conread position: 44-677
Cow position:
Alignm length: 638
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 135

Conread position: 46-664
Cow position:
Alignm length: 623
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 141

Conread position: 59-605
Cow position:
Alignm length: 550
Alignm identity: 317
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 194, 234

Conread position: 65-498
Cow position:
Alignm length: 436
Alignm identity: 276
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 100, 124

Conread position: 93-682
Cow position:
Alignm length: 593
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 5

Conread position: 98-624
Cow position:
Alignm length: 528
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 161

Conread position: 98-662
Cow position:
Alignm length: 568
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 64

Conread position: 101-678
Cow position:
Alignm length: 581
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 71

Conread position: 102-686
Cow position:
Alignm length: 585
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 106-670
Cow position:
Alignm length: 568
Alignm identity: 343
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 325, 336

Conread position: 106-682
Cow position:
Alignm length: 579
Alignm identity: 345
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 146, 169

Conread position: 107-669
Cow position:
Alignm length: 566
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 97

Conread position: 113-670
Cow position:
Alignm length: 561
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 62

Conread position: 116-670
Cow position:
Alignm length: 559
Alignm identity: 340
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 65, 72

Conread position: 125-554
Cow position:
Alignm length: 430
Alignm identity: 264
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 140-682
Cow position:
Alignm length: 547
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 207

Conread position: 149-660
Cow position:
Alignm length: 517
Alignm identity: 306
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 37

Conread position: 180-670
Cow position:
Alignm length: 495
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 176

Conread position: 181-670
Cow position:
Alignm length: 492
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 117

Conread position: 181-690
Cow position:
Alignm length: 513
Alignm identity: 304
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 68

Conread position: 182-675
Cow position:
Alignm length: 495
Alignm identity: 288
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 432, 439

Conread position: 190-638
Cow position:
Alignm length: 449
Alignm identity: 273
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 194-682
Cow position:
Alignm length: 493
Alignm identity: 296
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 11

Conread position: 203-682
Cow position:
Alignm length: 483
Alignm identity: 296
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 65, 60

Conread position: 203-684
Cow position:
Alignm length: 484
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 70

Conread position: 209-678
Cow position:
Alignm length: 472
Alignm identity: 275
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 61

Conread position: 262-669
Cow position:
Alignm length: 410
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 148

Conread position: 283-670
Cow position:
Alignm length: 389
Alignm identity: 243
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 149, 158

Conread position: 293-682
Cow position:
Alignm length: 392
Alignm identity: 244
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 67

Conread position: 295-690
Cow position:
Alignm length: 396
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 344-682
Cow position:
Alignm length: 340
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 167, 173

Conread position: 359-678
Cow position:
Alignm length: 322
Alignm identity: 203
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 76, 60

Conread position: 443-683
Cow position:
Alignm length: 242
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 82, 73

Show alignments to all cow chromosomes.