Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-328 |
| Cow position: | chr19:14948339-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 1-398 |
| Cow position: | chr19:23614736-23615131 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 92, 80 |
| Conread position: | 1-486 |
| Cow position: | chr19:20635505-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 166 |
| Conread position: | 1-494 |
| Cow position: | chr19:23650018-23650509 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 1-664 |
| Cow position: | chr19:43570338-43569689 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 54 |
| Conread position: | 1-677 |
| Cow position: | chr19:23649766-23650442 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 359 |
| Conread position: | 1-683 |
| Cow position: | chr19:14940032-14940714 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 106 |
| Conread position: | 1-685 |
| Cow position: | chr19:14959525-14958856 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 88 |
| Conread position: | 2-298 |
| Cow position: | chr19:14959119-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-305 |
| Cow position: | chr19:23597410-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-630 |
| Cow position: | chr19:23649851-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 170 |
| Conread position: | 2-670 |
| Cow position: | chr19:14960430-14959766 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 2-681 |
| Cow position: | chr19:14940201-14940880 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-681 |
| Cow position: | chr19:14940285-14940964 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-580 |
| Cow position: | chr19:23597159-23597735 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 556 |
| Conread position: | 5-655 |
| Cow position: | chr19:23614488-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 252 |
| Conread position: | 5-670 |
| Cow position: | chr19:23613816-23614481 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 561 |
| Conread position: | 9-411 |
| Cow position: | chr19:14948414-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 14 |
| Conread position: | 9-636 |
| Cow position: | chr19:14959921-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 9-659 |
| Cow position: | chr19:23613736-23614386 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-677 |
| Cow position: | chr19:14940376-14941044 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 248 |
| Conread position: | 9-683 |
| Cow position: | chr19:23614324-23614998 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 174 |
| Conread position: | 11-475 |
| Cow position: | chr19:20678341-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 168, 172 |
| Conread position: | 11-664 |
| Cow position: | chr19:23649524-23650177 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 11-668 |
| Cow position: | chr19:20677334-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 11-670 |
| Cow position: | chr19:23649608-23650267 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 161 |
| Conread position: | 12-683 |
| Cow position: | chr19:14939960-14940630 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 15 |
| Conread position: | 13-495 |
| Cow position: | chr19:20678259-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 247 |
| Conread position: | 13-638 |
| Cow position: | chr19:14959429-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 124 |
| Conread position: | 13-670 |
| Cow position: | chr19:20677671-20678328 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 323 |
| Conread position: | 13-670 |
| Cow position: | chr19:23613656-23614313 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 13-677 |
| Cow position: | chr19:23649442-23650106 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 13-682 |
| Cow position: | chr19:23649358-23650027 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 170 |
| Conread position: | 14-670 |
| Cow position: | chr19:20677924-20678580 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 345 |
| Conread position: | 14-670 |
| Cow position: | chr19:23613405-23614061 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 14-677 |
| Cow position: | chr19:23649695-23650358 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 253 |
| Conread position: | 15-677 |
| Cow position: | chr19:23614078-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 320 |
| Conread position: | 20-669 |
| Cow position: | chr19:23613495-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 152 |
| Conread position: | 21-412 |
| Cow position: | chr19:14916027-14916414 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 21-475 |
| Cow position: | chr19:20635401-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 385 |
| Conread position: | 21-564 |
| Cow position: | chr19:20635569-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 141 |
| Conread position: | 21-669 |
| Cow position: | chr19:23597012-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 21 |
| Conread position: | 21-669 |
| Cow position: | chr19:23614420-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 141 |
| Conread position: | 21-677 |
| Cow position: | chr19:23596844-23597497 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 22-373 |
| Cow position: | chr19:14940725-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-618 |
| Cow position: | chr19:14940473-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-664 |
| Cow position: | chr19:23614253-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 22-670 |
| Cow position: | chr19:23596929-23597574 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 110 |
| Conread position: | 22-670 |
| Cow position: | chr19:23614169-23614817 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 162 |
| Conread position: | 22-670 |
| Cow position: | chr19:23649283-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 506 |
| Conread position: | 23-641 |
| Cow position: | chr19:23597095-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 23-663 |
| Cow position: | chr19:14940138-14940778 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 228 |
| Conread position: | 23-669 |
| Cow position: | chr19:20678017-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 179 |
| Conread position: | 23-670 |
| Cow position: | chr19:14959991-14959360 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 23-670 |
| Cow position: | chr19:23613582-23614229 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 23-670 |
| Cow position: | chr19:23613918-23614565 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 313 |
| Conread position: | 23-686 |
| Cow position: | chr19:14960075-14959429 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 278 |
| Conread position: | 28-654 |
| Cow position: | chr19:20635646-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 28-670 |
| Cow position: | chr19:20677518-20678160 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 544 |
| Conread position: | 28-682 |
| Cow position: | chr19:14959582-14958943 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 29-663 |
| Cow position: | chr19:23614008-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 133 |
| Conread position: | 29-677 |
| Cow position: | chr19:43570394-43569756 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 116 |
| Conread position: | 29-682 |
| Cow position: | chr19:20677855-20678508 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 307 |
| Conread position: | 31-681 |
| Cow position: | chr19:23613337-23613988 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 330 |
| Conread position: | 35-670 |
| Cow position: | chr19:20677609-20678244 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 411 |
| Conread position: | 39-676 |
| Cow position: | chr19:14960477-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 618, 324 |
| Conread position: | 48-677 |
| Cow position: | chr19:23596787-23597413 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 49-661 |
| Cow position: | chr19:14915969-14916562 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 405 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 63-670 |
| Cow position: | chr19:20677304-20677908 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 57 |
| Conread position: | 64-666 |
| Cow position: | chr19:14959712-14959121 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 61 |
| Conread position: | 107-671 |
| Cow position: | chr19:20677513-20678077 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 112-677 |
| Cow position: | chr19:23649289-23649854 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 494 |
| Conread position: | 118-673 |
| Cow position: | chr19:20635640-20635085 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 151 |
| Conread position: | 131-647 |
| Cow position: | chr19:14915967-14916470 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 152-682 |
| Cow position: | chr19:14960448-14959920 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 185 |
| Conread position: | 188-680 |
| Cow position: | chr19:14948487-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 196-669 |
| Cow position: | chr19:20635646-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 399 |
| Conread position: | 207-686 |
| Cow position: | chr19:14960477-14960000 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 210-669 |
| Cow position: | chr19:14915962-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 212-682 |
| Cow position: | chr19:23613351-23613821 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 255 |
| Conread position: | 225-673 |
| Cow position: | chr19:20635701-20635253 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 120 |
| Conread position: | 260-682 |
| Cow position: | chr19:23613315-23613737 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 262-684 |
| Cow position: | chr19:14915851-14916268 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 293-682 |
| Cow position: | chr19:23649302-23649691 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-676 |
| Cow position: | chr19:23649283-23649601 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-684 |
| Cow position: | chr19:14939987-14940295 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 134 |
Show alignments to all cow chromosomes.