Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-660 |
| Cow position: | chr2:5875140-5874481 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 263 |
| Conread position: | 1-681 |
| Cow position: | chr2:5874804-5874124 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 179 |
| Conread position: | 1-684 |
| Cow position: | chr2:5874888-5874205 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 264 |
| Conread position: | 2-451 |
| Cow position: | chr2:82799989-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 2-670 |
| Cow position: | chr2:78755295-78755959 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 42 |
| Conread position: | 2-677 |
| Cow position: | chr2:82799485-82800160 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 86 |
| Conread position: | 3-636 |
| Cow position: | chr2:78755797-78756426 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 8 |
| Conread position: | 3-677 |
| Cow position: | chr2:82799653-82800328 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 4-664 |
| Cow position: | chr2:86465563-86466221 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 4-682 |
| Cow position: | chr2:78754877-78755553 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 368 |
| Conread position: | 5-678 |
| Cow position: | chr2:78754642-78755299 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 48 |
| Conread position: | 5-686 |
| Cow position: | chr2:78755632-78756312 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 33 |
| Conread position: | 9-375 |
| Cow position: | chr2:82800080-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 86 |
| Conread position: | 10-682 |
| Cow position: | chr2:78754397-78755051 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 11-624 |
| Cow position: | chr2:82799830-82800443 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 560, 555 |
| Conread position: | 11-669 |
| Cow position: | chr2:82799578-82800236 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 69 |
| Conread position: | 11-669 |
| Cow position: | chr2:86464982-86465640 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 158 |
| Conread position: | 11-673 |
| Cow position: | chr2:86465402-86466064 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 181 |
| Conread position: | 11-681 |
| Cow position: | chr2:86465486-86466156 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 406 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 170, 152 |
| Conread position: | 11-686 |
| Cow position: | chr2:82799746-82800421 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 160 |
| Conread position: | 13-670 |
| Cow position: | chr2:86465152-86465809 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 101 |
| Conread position: | 13-682 |
| Cow position: | chr2:5875044-5874375 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 421 |
| Conread position: | 20-408 |
| Cow position: | chr2:48689480-48689093 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 316, 83 |
| Conread position: | 22-669 |
| Cow position: | chr2:78754811-78755457 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 223 |
| Conread position: | 22-670 |
| Cow position: | chr2:86465329-86465977 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 394 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 161, 140 |
| Conread position: | 23-669 |
| Cow position: | chr2:5874950-5874303 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 253 |
| Conread position: | 26-669 |
| Cow position: | chr2:78754245-78754870 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 197 |
| Conread position: | 41-682 |
| Cow position: | chr2:78754176-78754811 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 54-678 |
| Cow position: | chr2:5875171-5874547 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 214 |
| Conread position: | 63-664 |
| Cow position: | chr2:78754117-78754712 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 68-674 |
| Cow position: | chr2:82799467-82800073 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 83-681 |
| Cow position: | chr2:82799396-82799996 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 254 |
| Conread position: | 107-670 |
| Cow position: | chr2:78754812-78755374 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 131-558 |
| Cow position: | chr2:48689538-48689111 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 190-682 |
| Cow position: | chr2:86465077-86465569 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 184, 189 |
| Conread position: | 226-686 |
| Cow position: | chr2:82799457-82799917 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 188 |
| Conread position: | 232-681 |
| Cow position: | chr2:5875161-5874712 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 267, 274 |
| Conread position: | 291-670 |
| Cow position: | chr2:48689546-48689167 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 129 |
| Conread position: | 297-678 |
| Cow position: | chr2:5875180-5874799 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 283, 294 |
| Conread position: | 467-673 |
| Cow position: | chr2:78754101-78754304 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.