Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-235 |
| Cow position: | chr23:24626518-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 1-363 |
| Cow position: | chr23:24639762-24640123 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 176, 161 |
| Conread position: | 1-429 |
| Cow position: | chr23:25698530-25698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 182, 171 |
| Conread position: | 1-470 |
| Cow position: | chr23:25660277-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 1-686 |
| Cow position: | chr23:25626240-25626922 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 196 |
| Conread position: | 1-686 |
| Cow position: | chr23:25626324-25627006 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 166 |
| Conread position: | 2-384 |
| Cow position: | chr23:24535834-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-385 |
| Cow position: | chr23:25626658-25627039 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 0 |
| Conread position: | 2-469 |
| Cow position: | chr23:24560595-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-552 |
| Cow position: | chr23:24560679-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-591 |
| Cow position: | chr23:24522774-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 2-682 |
| Cow position: | chr23:24639343-24640023 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 3-487 |
| Cow position: | chr23:24626268-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 3-535 |
| Cow position: | chr23:25698613-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 264 |
| Conread position: | 4-501 |
| Cow position: | chr23:24547117-24546621 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 462 |
| Conread position: | 5-673 |
| Cow position: | chr23:24639262-24639930 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 252 |
| Conread position: | 9-205 |
| Cow position: | chr23:25723909-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 90 |
| Conread position: | 9-338 |
| Cow position: | chr23:24535743-24535413 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 9-367 |
| Cow position: | chr23:24654083-24654440 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 322, 0 |
| Conread position: | 9-649 |
| Cow position: | chr23:24639434-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 153 |
| Conread position: | 13-515 |
| Cow position: | chr23:25626585-25627088 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 146 |
| Conread position: | 13-530 |
| Cow position: | chr23:24639606-24640122 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 159 |
| Conread position: | 14-540 |
| Cow position: | chr23:24547191-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 148 |
| Conread position: | 14-542 |
| Cow position: | chr23:25660206-25660734 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 180 |
| Conread position: | 14-683 |
| Cow position: | chr23:25626421-25627088 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 115 |
| Conread position: | 18-669 |
| Cow position: | chr23:24522674-24522011 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 65 |
| Conread position: | 20-553 |
| Cow position: | chr23:24535984-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 394 |
| Conread position: | 21-669 |
| Cow position: | chr23:25626008-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 84 |
| Conread position: | 22-619 |
| Cow position: | chr23:25698677-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 22-624 |
| Cow position: | chr23:24547267-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-682 |
| Cow position: | chr23:24560826-24560167 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-686 |
| Cow position: | chr23:24639199-24639859 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 39-670 |
| Cow position: | chr23:24547334-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-677 |
| Cow position: | chr23:25625945-25626580 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 41-625 |
| Cow position: | chr23:25660149-25660733 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 214 |
| Conread position: | 43-670 |
| Cow position: | chr23:24560890-24560263 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 47-395 |
| Cow position: | chr23:24654037-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-636 |
| Cow position: | chr23:24560716-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 59-412 |
| Cow position: | chr23:25724111-25723758 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 300 |
| Conread position: | 65-670 |
| Cow position: | chr23:24536023-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 574, 0 |
| Conread position: | 69-675 |
| Cow position: | chr23:24522791-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 70 |
| Conread position: | 87-565 |
| Cow position: | chr23:24626268-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 107-686 |
| Cow position: | chr23:25698676-25698097 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 115-683 |
| Cow position: | chr23:24560902-24560334 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 117-682 |
| Cow position: | chr23:24522825-24522265 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 121-675 |
| Cow position: | chr23:25660145-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 121-682 |
| Cow position: | chr23:24536051-24535490 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 406 |
| Conread position: | 136-536 |
| Cow position: | chr23:24654042-24654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 149-540 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 181-669 |
| Cow position: | chr23:25626000-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 190-695 |
| Cow position: | chr23:24547267-24546763 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 502, 0 |
| Conread position: | 192-690 |
| Cow position: | chr23:24639197-24639695 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 205-655 |
| Cow position: | chr23:24626302-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 0 |
| Conread position: | 205-670 |
| Cow position: | chr23:24536051-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-410 |
| Cow position: | chr23:24521982-24521778 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 129 |
| Conread position: | 207-684 |
| Cow position: | chr23:24547334-24546857 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 153 |
| Conread position: | 208-682 |
| Cow position: | chr23:25625945-25626417 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 211-683 |
| Cow position: | chr23:24522815-24522348 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 383, 25 |
| Conread position: | 220-563 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 222-624 |
| Cow position: | chr23:25724116-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 114 |
| Conread position: | 265-683 |
| Cow position: | chr23:25698686-25698268 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 232, 240 |
| Conread position: | 291-683 |
| Cow position: | chr23:24536049-24535657 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-683 |
| Cow position: | chr23:25625945-25626334 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 293-682 |
| Cow position: | chr23:24626306-24626695 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-683 |
| Cow position: | chr23:25660149-25660539 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 223 |
| Conread position: | 304-665 |
| Cow position: | chr23:24654042-24654403 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-682 |
| Cow position: | chr23:25724107-25723740 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-670 |
| Cow position: | chr23:24626251-24626599 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 346-676 |
| Cow position: | chr23:25698688-25698359 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 355-683 |
| Cow position: | chr23:24560914-24560586 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-677 |
| Cow position: | chr23:25660145-25660449 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 229, 222 |
| Conread position: | 388-684 |
| Cow position: | chr23:24654042-24654338 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-686 |
| Cow position: | chr23:25625961-25626253 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 122 |
| Conread position: | 463-690 |
| Cow position: | chr23:24560890-24560663 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.