Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-301 |
| Cow position: | chr28:9253312-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-453 |
| Cow position: | chr28:9299262-9299711 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 170 |
| Conread position: | 1-678 |
| Cow position: | chr28:9298691-9299351 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-682 |
| Cow position: | chr28:7757625-7758306 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-683 |
| Cow position: | chr28:7757961-7758627 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 359 |
| Conread position: | 1-684 |
| Cow position: | chr28:7758129-7758795 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 1-686 |
| Cow position: | chr28:9298858-9299527 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 2-469 |
| Cow position: | chr28:9253145-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-624 |
| Cow position: | chr28:7757710-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-651 |
| Cow position: | chr28:7810306-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 2-682 |
| Cow position: | chr28:7757878-7758542 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 0 |
| Conread position: | 2-686 |
| Cow position: | chr28:9289798-9290472 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 70 |
| Conread position: | 3-572 |
| Cow position: | chr28:7810391-7810950 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 3-671 |
| Cow position: | chr28:7757543-7758211 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-675 |
| Cow position: | chr28:9252978-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 633, 0 |
| Conread position: | 3-682 |
| Cow position: | chr28:7757459-7758138 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-423 |
| Cow position: | chr28:7758452-7758871 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 323 |
| Conread position: | 4-592 |
| Cow position: | chr28:9290132-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 85 |
| Conread position: | 4-620 |
| Cow position: | chr28:9299111-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 75 |
| Conread position: | 4-684 |
| Cow position: | chr28:9299027-9299690 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 618, 158 |
| Conread position: | 5-426 |
| Cow position: | chr28:9290297-9290716 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 84 |
| Conread position: | 5-678 |
| Cow position: | chr28:9289962-9290632 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 163 |
| Conread position: | 8-676 |
| Cow position: | chr28:9290052-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 12-675 |
| Cow position: | chr28:7758224-7758871 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 108 |
| Conread position: | 12-681 |
| Cow position: | chr28:7757384-7758053 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-659 |
| Cow position: | chr28:11334000-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 0 |
| Conread position: | 16-682 |
| Cow position: | chr28:7757147-7757802 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 20-388 |
| Cow position: | chr28:33210288-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 21-435 |
| Cow position: | chr28:34679499-34679093 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 119 |
| Conread position: | 21-683 |
| Cow position: | chr28:9252911-9253574 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 23-396 |
| Cow position: | chr28:34696227-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 180 |
| Conread position: | 23-447 |
| Cow position: | chr28:34696143-34696567 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-520 |
| Cow position: | chr28:7758387-7758884 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 385 |
| Conread position: | 23-585 |
| Cow position: | chr28:11333738-11333175 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 217, 233 |
| Conread position: | 23-682 |
| Cow position: | chr28:7757233-7757886 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 88 |
| Conread position: | 23-686 |
| Cow position: | chr28:9252832-9253493 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 26-683 |
| Cow position: | chr28:34695726-34696383 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 399 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 27-658 |
| Cow position: | chr28:11334154-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 309 |
| Conread position: | 27-677 |
| Cow position: | chr28:34695897-34696545 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 20 |
| Conread position: | 27-682 |
| Cow position: | chr28:9298218-9298867 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 39-648 |
| Cow position: | chr28:34695991-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 128 |
| Conread position: | 40-682 |
| Cow position: | chr28:9252600-9253237 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 41-541 |
| Cow position: | chr28:9299218-9299716 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 305 |
| Conread position: | 42-593 |
| Cow position: | chr28:34673353-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 44-437 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 59-683 |
| Cow position: | chr28:11334206-11333582 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-543 |
| Cow position: | chr28:34679541-34679069 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 191, 160 |
| Conread position: | 63-682 |
| Cow position: | chr28:7810283-7810893 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 254 |
| Conread position: | 68-665 |
| Cow position: | chr28:9298591-9299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 86-625 |
| Cow position: | chr28:34679600-34679071 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 102-684 |
| Cow position: | chr28:11334247-11333665 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 107-677 |
| Cow position: | chr28:34695891-34696461 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 107-684 |
| Cow position: | chr28:9298214-9298786 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 355 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 353, 31 |
| Conread position: | 109-683 |
| Cow position: | chr28:7757397-7757971 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 131-556 |
| Cow position: | chr28:33210231-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 330, 0 |
| Conread position: | 131-682 |
| Cow position: | chr28:7756920-7757466 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 332 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 149-686 |
| Cow position: | chr28:7810285-7810813 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 188-682 |
| Cow position: | chr28:9252580-9253069 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 313 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 191-683 |
| Cow position: | chr28:7757233-7757719 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 102 |
| Conread position: | 203-666 |
| Cow position: | chr28:9289747-9290206 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 136 |
| Conread position: | 205-684 |
| Cow position: | chr28:7757163-7757636 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 209-503 |
| Cow position: | chr28:7809829-7810117 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 212-605 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 219-670 |
| Cow position: | chr28:34673362-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 112, 138 |
| Conread position: | 293-670 |
| Cow position: | chr28:34679561-34679183 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 229, 15 |
| Conread position: | 294-678 |
| Cow position: | chr28:34673353-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 139 |
| Conread position: | 296-682 |
| Cow position: | chr28:33210228-33210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 338, 0 |
| Conread position: | 319-681 |
| Cow position: | chr28:33210170-33210529 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 358-649 |
| Cow position: | chr28:7810251-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 428-669 |
| Cow position: | chr28:34679594-34679357 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 91, 48 |
Show alignments to all cow chromosomes.