Cow genome map

Conread name: Ss1.1-rsug17_g7.5

Conread position: 1-301
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-453
Cow position:
Alignm length: 455
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 170

Conread position: 1-678
Cow position:
Alignm length: 678
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 1-682
Cow position:
Alignm length: 682
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-683
Cow position:
Alignm length: 684
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 359

Conread position: 1-684
Cow position:
Alignm length: 684
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 1-686
Cow position:
Alignm length: 686
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 2-469
Cow position:
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-624
Cow position:
Alignm length: 623
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-651
Cow position:
Alignm length: 650
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 0

Conread position: 2-682
Cow position:
Alignm length: 681
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 0

Conread position: 2-686
Cow position:
Alignm length: 691
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 70

Conread position: 3-572
Cow position:
Alignm length: 570
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 3-671
Cow position:
Alignm length: 669
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-675
Cow position:
Alignm length: 674
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 633, 0

Conread position: 3-682
Cow position:
Alignm length: 680
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-423
Cow position:
Alignm length: 421
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 323

Conread position: 4-592
Cow position:
Alignm length: 591
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 85

Conread position: 4-620
Cow position:
Alignm length: 619
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 75

Conread position: 4-684
Cow position:
Alignm length: 683
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 618, 158

Conread position: 5-426
Cow position:
Alignm length: 423
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 84

Conread position: 5-678
Cow position:
Alignm length: 682
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 163

Conread position: 8-676
Cow position:
Alignm length: 673
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 71

Conread position: 12-675
Cow position:
Alignm length: 667
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 588, 108

Conread position: 12-681
Cow position:
Alignm length: 670
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-659
Cow position:
Alignm length: 647
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 0

Conread position: 16-682
Cow position:
Alignm length: 668
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 11

Conread position: 20-388
Cow position:
Alignm length: 373
Alignm identity: 239
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 28, 45

Conread position: 21-435
Cow position:
Alignm length: 422
Alignm identity: 271
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 154, 119

Conread position: 21-683
Cow position:
Alignm length: 665
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 23-396
Cow position:
Alignm length: 377
Alignm identity: 234
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 157, 180

Conread position: 23-447
Cow position:
Alignm length: 425
Alignm identity: 259
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 23-520
Cow position:
Alignm length: 501
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 385

Conread position: 23-585
Cow position:
Alignm length: 574
Alignm identity: 346
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 217, 233

Conread position: 23-682
Cow position:
Alignm length: 662
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 88

Conread position: 23-686
Cow position:
Alignm length: 666
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 62

Conread position: 26-683
Cow position:
Alignm length: 663
Alignm identity: 399
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 151, 145

Conread position: 27-658
Cow position:
Alignm length: 633
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 309

Conread position: 27-677
Cow position:
Alignm length: 653
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 20

Conread position: 27-682
Cow position:
Alignm length: 661
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 22

Conread position: 39-648
Cow position:
Alignm length: 612
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 128

Conread position: 40-682
Cow position:
Alignm length: 645
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 49

Conread position: 41-541
Cow position:
Alignm length: 505
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 305

Conread position: 42-593
Cow position:
Alignm length: 556
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 67

Conread position: 44-437
Cow position:
Alignm length: 395
Alignm identity: 245
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 333, 0

Conread position: 59-683
Cow position:
Alignm length: 625
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-543
Cow position:
Alignm length: 487
Alignm identity: 308
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 191, 160

Conread position: 63-682
Cow position:
Alignm length: 621
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 254

Conread position: 68-665
Cow position:
Alignm length: 600
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 75

Conread position: 86-625
Cow position:
Alignm length: 548
Alignm identity: 334
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 105, 54

Conread position: 102-684
Cow position:
Alignm length: 586
Alignm identity: 350
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 150, 160

Conread position: 107-677
Cow position:
Alignm length: 573
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 97

Conread position: 107-684
Cow position:
Alignm length: 582
Alignm identity: 355
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 353, 31

Conread position: 109-683
Cow position:
Alignm length: 576
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 53

Conread position: 131-556
Cow position:
Alignm length: 427
Alignm identity: 270
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 330, 0

Conread position: 131-682
Cow position:
Alignm length: 559
Alignm identity: 332
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 93

Conread position: 149-686
Cow position:
Alignm length: 540
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 28

Conread position: 188-682
Cow position:
Alignm length: 497
Alignm identity: 313
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 64, 77

Conread position: 191-683
Cow position:
Alignm length: 494
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 102

Conread position: 203-666
Cow position:
Alignm length: 469
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 136

Conread position: 205-684
Cow position:
Alignm length: 480
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 209-503
Cow position:
Alignm length: 296
Alignm identity: 190
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 57

Conread position: 212-605
Cow position:
Alignm length: 395
Alignm identity: 250
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 332, 0

Conread position: 219-670
Cow position:
Alignm length: 454
Alignm identity: 276
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 112, 138

Conread position: 293-670
Cow position:
Alignm length: 384
Alignm identity: 248
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 229, 15

Conread position: 294-678
Cow position:
Alignm length: 391
Alignm identity: 250
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 129, 139

Conread position: 296-682
Cow position:
Alignm length: 388
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 338, 0

Conread position: 319-681
Cow position:
Alignm length: 365
Alignm identity: 226
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 25

Conread position: 358-649
Cow position:
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 428-669
Cow position:
Alignm length: 243
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 91, 48

Show alignments to all cow chromosomes.