Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-295 |
| Cow position: | chr3:68027469-68027763 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 178, 186 |
| Conread position: | 1-361 |
| Cow position: | chr3:68027385-68027745 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 181, 161 |
| Conread position: | 1-464 |
| Cow position: | chr3:68045894-68046355 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 187 |
| Conread position: | 1-530 |
| Cow position: | chr3:62722116-62721587 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 87 |
| Conread position: | 2-331 |
| Cow position: | chr3:62743134-62743463 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 175, 181 |
| Conread position: | 4-624 |
| Cow position: | chr3:62722198-62721577 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 8-682 |
| Cow position: | chr3:62742494-62743142 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 147 |
| Conread position: | 9-686 |
| Cow position: | chr3:62722276-62721599 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 11-682 |
| Cow position: | chr3:68027059-68027730 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 255 |
| Conread position: | 11-682 |
| Cow position: | chr3:68045652-68046323 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 13-639 |
| Cow position: | chr3:62742415-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 226 |
| Conread position: | 13-673 |
| Cow position: | chr3:68045738-68046393 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 174 |
| Conread position: | 17-540 |
| Cow position: | chr3:68027233-68027756 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 325 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 158, 173 |
| Conread position: | 17-682 |
| Cow position: | chr3:62742336-62742996 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 18 |
| Conread position: | 20-375 |
| Cow position: | chr3:62721929-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-397 |
| Cow position: | chr3:77350936-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 20-413 |
| Cow position: | chr3:62743073-62743461 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 320, 42 |
| Conread position: | 21-663 |
| Cow position: | chr3:62722348-62721706 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 22-679 |
| Cow position: | chr3:62742839-62743475 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 42-682 |
| Cow position: | chr3:68045599-68046239 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 49-649 |
| Cow position: | chr3:77351151-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 367 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 68-682 |
| Cow position: | chr3:68027032-68027646 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 89-677 |
| Cow position: | chr3:68045562-68046150 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 271 |
| Conread position: | 99-677 |
| Cow position: | chr3:68026979-68027557 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 107-670 |
| Cow position: | chr3:77351261-77350706 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 107-686 |
| Cow position: | chr3:62742258-62742831 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 355 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 130-664 |
| Cow position: | chr3:62722323-62721789 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 205 |
| Conread position: | 152-686 |
| Cow position: | chr3:77351300-77350774 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 190-669 |
| Cow position: | chr3:62742257-62742732 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 214-686 |
| Cow position: | chr3:62722323-62721851 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 259-670 |
| Cow position: | chr3:62742241-62742650 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 318-674 |
| Cow position: | chr3:62722387-62722031 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 351-670 |
| Cow position: | chr3:62742250-62742568 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-678 |
| Cow position: | chr3:68045593-68045899 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 428-686 |
| Cow position: | chr3:68045565-68045823 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 81, 90 |
Show alignments to all cow chromosomes.