Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-344 |
| Cow position: | chr7:18390455-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-437 |
| Cow position: | chr7:1438290-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 182 |
| Conread position: | 1-514 |
| Cow position: | chr7:1438206-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 108 |
| Conread position: | 1-625 |
| Cow position: | chr7:42878899-42878275 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-677 |
| Cow position: | chr7:18390035-18390711 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-682 |
| Cow position: | chr7:42878983-42878302 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 247 |
| Conread position: | 1-686 |
| Cow position: | chr7:1439511-1440196 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 77 |
| Conread position: | 2-625 |
| Cow position: | chr7:11601062-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 422 |
| Conread position: | 2-669 |
| Cow position: | chr7:1014315-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 170 |
| Conread position: | 2-685 |
| Cow position: | chr7:1439595-1440279 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 3-542 |
| Cow position: | chr7:42878813-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-682 |
| Cow position: | chr7:42879233-42878554 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 501 |
| Conread position: | 3-695 |
| Cow position: | chr7:42879149-42878455 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 677, 0 |
| Conread position: | 9-502 |
| Cow position: | chr7:28846473-28846965 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 168, 6 |
| Conread position: | 10-565 |
| Cow position: | chr7:1438133-1438686 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 63 |
| Conread position: | 12-681 |
| Cow position: | chr7:11601135-11600466 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 13-509 |
| Cow position: | chr7:18390299-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-521 |
| Cow position: | chr7:1439777-1440283 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 14-431 |
| Cow position: | chr7:1015077-1015496 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 149 |
| Conread position: | 14-655 |
| Cow position: | chr7:3180339-3180972 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 451 |
| Conread position: | 14-684 |
| Cow position: | chr7:3179835-3180505 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 321 |
| Conread position: | 20-677 |
| Cow position: | chr7:18389970-18390627 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 20-682 |
| Cow position: | chr7:1014831-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 316 |
| Conread position: | 20-686 |
| Cow position: | chr7:1014417-1015077 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 227 |
| Conread position: | 20-686 |
| Cow position: | chr7:3180093-3180759 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-649 |
| Cow position: | chr7:8277741-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 21-669 |
| Cow position: | chr7:8243447-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 21-669 |
| Cow position: | chr7:11601210-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 569 |
| Conread position: | 21-670 |
| Cow position: | chr7:8324878-8325527 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 71 |
| Conread position: | 21-682 |
| Cow position: | chr7:3179758-3180419 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 219 |
| Conread position: | 22-375 |
| Cow position: | chr7:8325803-8326159 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 22-412 |
| Cow position: | chr7:8325719-8326109 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 81 |
| Conread position: | 22-669 |
| Cow position: | chr7:8277826-8278471 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 22-669 |
| Cow position: | chr7:8325383-8326030 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 22-670 |
| Cow position: | chr7:8242861-8243508 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 22-670 |
| Cow position: | chr7:8325215-8325863 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 22-675 |
| Cow position: | chr7:8277658-8278311 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 22-677 |
| Cow position: | chr7:18390140-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 22-682 |
| Cow position: | chr7:3180179-3180838 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 22-684 |
| Cow position: | chr7:3179927-3180589 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 302 |
| Conread position: | 22-686 |
| Cow position: | chr7:42879046-42878382 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 314 |
| Conread position: | 23-670 |
| Cow position: | chr7:8325468-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 23-677 |
| Cow position: | chr7:1014750-1015404 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-694 |
| Cow position: | chr7:3180012-3180683 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 312 |
| Conread position: | 26-682 |
| Cow position: | chr7:1014669-1015325 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 146 |
| Conread position: | 26-682 |
| Cow position: | chr7:1439452-1440108 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 136 |
| Conread position: | 28-543 |
| Cow position: | chr7:11600951-11600436 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 28-664 |
| Cow position: | chr7:1014257-1014887 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 307 |
| Conread position: | 29-670 |
| Cow position: | chr7:8243204-8243844 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 395 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 29-681 |
| Cow position: | chr7:42879458-42878807 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 41-644 |
| Cow position: | chr7:11434819-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 370 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 152, 135 |
| Conread position: | 41-670 |
| Cow position: | chr7:8277257-8277886 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 43-670 |
| Cow position: | chr7:11434971-11434365 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 44-682 |
| Cow position: | chr7:42879276-42878638 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 63-678 |
| Cow position: | chr7:42879341-42878727 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 104 |
| Conread position: | 67-686 |
| Cow position: | chr7:3179720-3180339 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 95 |
| Conread position: | 72-686 |
| Cow position: | chr7:1014217-1014825 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 347 |
| Conread position: | 75-663 |
| Cow position: | chr7:3179640-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 107-669 |
| Cow position: | chr7:8243030-8243591 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 346 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 158, 167 |
| Conread position: | 107-670 |
| Cow position: | chr7:8277575-8278138 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 251 |
| Conread position: | 109-682 |
| Cow position: | chr7:1439451-1440024 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 109-686 |
| Cow position: | chr7:1014668-1015245 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 326 |
| Conread position: | 111-673 |
| Cow position: | chr7:11601204-11600642 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 309 |
| Conread position: | 112-695 |
| Cow position: | chr7:1437986-1438563 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 123-686 |
| Cow position: | chr7:18389989-18390552 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 147 |
| Conread position: | 130-670 |
| Cow position: | chr7:8324735-8325275 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 200, 226 |
| Conread position: | 133-670 |
| Cow position: | chr7:8242804-8243341 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 136-670 |
| Cow position: | chr7:8243394-8243928 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 153-682 |
| Cow position: | chr7:1438190-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 110 |
| Conread position: | 176-669 |
| Cow position: | chr7:3179661-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 189-682 |
| Cow position: | chr7:1439447-1439941 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 138 |
| Conread position: | 190-689 |
| Cow position: | chr7:11601209-11600710 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 232-673 |
| Cow position: | chr7:11601250-11600810 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 26 |
| Conread position: | 274-689 |
| Cow position: | chr7:1439448-1439866 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 140 |
| Conread position: | 281-682 |
| Cow position: | chr7:42879458-42879058 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 293-682 |
| Cow position: | chr7:42879363-42878974 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 311-686 |
| Cow position: | chr7:3179712-3180087 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.