Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-289 |
| Cow position: | chr8:46817094-46817382 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-660 |
| Cow position: | chr8:45201479-45202130 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 354 |
| Conread position: | 1-666 |
| Cow position: | chr8:45201311-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 256 |
| Conread position: | 1-669 |
| Cow position: | chr8:46816674-46817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 155 |
| Conread position: | 1-682 |
| Cow position: | chr8:45200807-45201488 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-418 |
| Cow position: | chr8:55581284-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 192 |
| Conread position: | 2-671 |
| Cow position: | chr8:46816591-46817260 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 2-678 |
| Cow position: | chr8:46816339-46817014 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 0 |
| Conread position: | 2-682 |
| Cow position: | chr8:46816003-46816683 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 3-683 |
| Cow position: | chr8:45201061-45201741 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-683 |
| Cow position: | chr8:46816256-46816936 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 156 |
| Conread position: | 4-677 |
| Cow position: | chr8:48407250-48406577 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 183 |
| Conread position: | 4-682 |
| Cow position: | chr8:46816509-46817187 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 494, 506 |
| Conread position: | 5-670 |
| Cow position: | chr8:46816174-46816839 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 331 |
| Conread position: | 5-675 |
| Cow position: | chr8:48407585-48406915 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 424 |
| Conread position: | 5-682 |
| Cow position: | chr8:45201147-45201824 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-690 |
| Cow position: | chr8:48407078-48406396 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 427 |
| Conread position: | 9-682 |
| Cow position: | chr8:46816430-46817103 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 349 |
| Conread position: | 11-670 |
| Cow position: | chr8:55581041-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 324 |
| Conread position: | 12-659 |
| Cow position: | chr8:48406906-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 13-682 |
| Cow position: | chr8:45200987-45201656 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 14-682 |
| Cow position: | chr8:45201240-45201908 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 243 |
| Conread position: | 14-682 |
| Cow position: | chr8:55580960-55581628 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 21-540 |
| Cow position: | chr8:55581219-55581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 255 |
| Conread position: | 21-669 |
| Cow position: | chr8:48407485-48406837 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 398 |
| Conread position: | 21-670 |
| Cow position: | chr8:48407317-48406668 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 482 |
| Conread position: | 21-670 |
| Cow position: | chr8:55580799-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 149 |
| Conread position: | 21-676 |
| Cow position: | chr8:48406981-48406326 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 78 |
| Conread position: | 22-655 |
| Cow position: | chr8:48407400-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 22-689 |
| Cow position: | chr8:46815936-46816606 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 320 |
| Conread position: | 23-373 |
| Cow position: | chr8:55581389-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-682 |
| Cow position: | chr8:46816108-46816767 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 27-682 |
| Cow position: | chr8:48407647-48406992 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 476 |
| Conread position: | 28-686 |
| Cow position: | chr8:55580890-55581548 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 46-682 |
| Cow position: | chr8:45200936-45201572 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-683 |
| Cow position: | chr8:45200786-45201405 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 94 |
| Conread position: | 65-544 |
| Cow position: | chr8:6958059-6957583 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 290, 270 |
| Conread position: | 123-669 |
| Cow position: | chr8:48407635-48407089 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 139-675 |
| Cow position: | chr8:55580833-55581369 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 268-682 |
| Cow position: | chr8:48407658-48407244 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 282-682 |
| Cow position: | chr8:55580808-55581208 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 295-686 |
| Cow position: | chr8:55580736-55581128 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 98 |
Show alignments to all cow chromosomes.