Cow genome map
| Conread name: | Ss1.1-rsug17_g7.5 |
| Conread position: | 1-266 |
| Cow position: | chrX:29045702-29045440 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 1-563 |
| Cow position: | chrX:25324790-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 95 |
| Conread position: | 1-663 |
| Cow position: | chrX:25325714-25325052 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 161 |
| Conread position: | 1-670 |
| Cow position: | chrX:25325210-25324541 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 335 |
| Conread position: | 1-690 |
| Cow position: | chrX:29045618-29044950 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 161 |
| Conread position: | 2-678 |
| Cow position: | chrX:25325041-25324365 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 265 |
| Conread position: | 2-682 |
| Cow position: | chrX:25325377-25324697 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 324 |
| Conread position: | 3-398 |
| Cow position: | chrX:29045049-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-564 |
| Cow position: | chrX:25310017-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 262 |
| Conread position: | 4-657 |
| Cow position: | chrX:25309934-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 97 |
| Conread position: | 4-671 |
| Cow position: | chrX:25309766-25310433 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 422 |
| Conread position: | 4-692 |
| Cow position: | chrX:25324871-25324186 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 180 |
| Conread position: | 5-563 |
| Cow position: | chrX:29045215-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 157 |
| Conread position: | 5-670 |
| Cow position: | chrX:25309850-25310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 163 |
| Conread position: | 6-670 |
| Cow position: | chrX:25324953-25324289 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 9-650 |
| Cow position: | chrX:29045294-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 9-670 |
| Cow position: | chrX:25325538-25324877 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 485 |
| Conread position: | 12-492 |
| Cow position: | chrX:14181421-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 13-517 |
| Cow position: | chrX:13826727-13826223 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 435, 454 |
| Conread position: | 14-517 |
| Cow position: | chrX:13826810-13826306 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 14-670 |
| Cow position: | chrX:12627325-12627979 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 395 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 432, 165 |
| Conread position: | 14-682 |
| Cow position: | chrX:25325785-25325117 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 177 |
| Conread position: | 22-686 |
| Cow position: | chrX:25309700-25310364 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 161 |
| Conread position: | 23-408 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 23-669 |
| Cow position: | chrX:12627418-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 400 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 23-682 |
| Cow position: | chrX:25325104-25324445 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 312 |
| Conread position: | 23-682 |
| Cow position: | chrX:25325272-25324613 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 154 |
| Conread position: | 26-686 |
| Cow position: | chrX:29045359-29044702 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 28-682 |
| Cow position: | chrX:25325435-25324781 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 237 |
| Conread position: | 35-670 |
| Cow position: | chrX:29045836-29045222 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 153 |
| Conread position: | 39-670 |
| Cow position: | chrX:25325592-25324961 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 534, 528 |
| Conread position: | 41-684 |
| Cow position: | chrX:13826867-13826224 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 377 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 44-682 |
| Cow position: | chrX:13826948-13826309 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 382 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 63-681 |
| Cow position: | chrX:25325820-25325202 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 107-564 |
| Cow position: | chrX:14181411-14180954 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 253, 249 |
| Conread position: | 113-581 |
| Cow position: | chrX:29045842-29045374 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 149 |
| Conread position: | 191-660 |
| Cow position: | chrX:14181411-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 191-686 |
| Cow position: | chrX:25325776-25325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 481 |
| Conread position: | 271-669 |
| Cow position: | chrX:25309697-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 295 |
| Conread position: | 279-669 |
| Cow position: | chrX:29045844-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 285-682 |
| Cow position: | chrX:25325850-25325453 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 305-669 |
| Cow position: | chrX:12627280-12627642 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 318-691 |
| Cow position: | chrX:25309660-25310033 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 377-691 |
| Cow position: | chrX:29045830-29045516 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 58, 43 |
Show alignments to all cow chromosomes.