Cow genome map

Conread name: Ss1.1-rtes03_e2.5

Conread position: 2-615
Cow position:
Alignm length: 618
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 66

Conread position: 2-698
Cow position:
Alignm length: 700
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 76

Conread position: 4-566
Cow position:
Alignm length: 569
Alignm identity: 349
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 73, 85

Conread position: 4-651
Cow position:
Alignm length: 651
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 85

Conread position: 4-683
Cow position:
Alignm length: 684
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 80

Conread position: 4-695
Cow position:
Alignm length: 696
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 86

Conread position: 4-700
Cow position:
Alignm length: 700
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 78

Conread position: 5-535
Cow position:
Alignm length: 536
Alignm identity: 321
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 72, 62

Conread position: 5-652
Cow position:
Alignm length: 652
Alignm identity: 390
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 77, 73

Conread position: 9-501
Cow position:
Alignm length: 500
Alignm identity: 319
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 165, 141

Conread position: 10-399
Cow position:
Alignm length: 392
Alignm identity: 236
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 71

Conread position: 11-402
Cow position:
Alignm length: 392
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-653
Cow position:
Alignm length: 646
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 66

Conread position: 11-653
Cow position:
Alignm length: 650
Alignm identity: 384
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 57

Conread position: 11-683
Cow position:
Alignm length: 675
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 574, 566

Conread position: 11-700
Cow position:
Alignm length: 695
Alignm identity: 407
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 330, 308

Conread position: 11-731
Cow position:
Alignm length: 726
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 573

Conread position: 12-188
Cow position:
Alignm length: 178
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 66

Conread position: 12-393
Cow position:
Alignm length: 387
Alignm identity: 235
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 66

Conread position: 12-413
Cow position:
Alignm length: 405
Alignm identity: 260
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 279, 319

Conread position: 12-606
Cow position:
Alignm length: 596
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 139

Conread position: 12-615
Cow position:
Alignm length: 607
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 64

Conread position: 12-653
Cow position:
Alignm length: 648
Alignm identity: 388
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 78

Conread position: 12-653
Cow position:
Alignm length: 646
Alignm identity: 386
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 239, 246

Conread position: 12-657
Cow position:
Alignm length: 650
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 12-666
Cow position:
Alignm length: 662
Alignm identity: 384
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 65, 75

Conread position: 12-677
Cow position:
Alignm length: 674
Alignm identity: 403
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 65, 75

Conread position: 12-683
Cow position:
Alignm length: 673
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 153

Conread position: 12-692
Cow position:
Alignm length: 687
Alignm identity: 409
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 317, 307

Conread position: 12-695
Cow position:
Alignm length: 685
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 149

Conread position: 12-699
Cow position:
Alignm length: 695
Alignm identity: 415
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 57, 78

Conread position: 12-699
Cow position:
Alignm length: 696
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 77

Conread position: 12-699
Cow position:
Alignm length: 694
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 66

Conread position: 12-700
Cow position:
Alignm length: 693
Alignm identity: 403
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 27, 36

Conread position: 12-700
Cow position:
Alignm length: 698
Alignm identity: 423
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 75, 67

Conread position: 12-700
Cow position:
Alignm length: 696
Alignm identity: 414
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 69, 78

Conread position: 13-363
Cow position:
Alignm length: 352
Alignm identity: 214
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 232, 244

Conread position: 13-447
Cow position:
Alignm length: 451
Alignm identity: 292
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 64, 77

Conread position: 13-732
Cow position:
Alignm length: 726
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 254

Conread position: 14-440
Cow position:
Alignm length: 428
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 396, 182

Conread position: 14-532
Cow position:
Alignm length: 519
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-653
Cow position:
Alignm length: 642
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 393

Conread position: 14-653
Cow position:
Alignm length: 641
Alignm identity: 362
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 574, 561

Conread position: 14-692
Cow position:
Alignm length: 687
Alignm identity: 415
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 73

Conread position: 14-695
Cow position:
Alignm length: 683
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 570

Conread position: 14-698
Cow position:
Alignm length: 690
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 67

Conread position: 14-699
Cow position:
Alignm length: 688
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 14-732
Cow position:
Alignm length: 723
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 680, 712

Conread position: 15-484
Cow position:
Alignm length: 472
Alignm identity: 292
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 145, 150

Conread position: 15-607
Cow position:
Alignm length: 596
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 153

Conread position: 15-651
Cow position:
Alignm length: 646
Alignm identity: 378
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 115, 82

Conread position: 15-653
Cow position:
Alignm length: 643
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 69

Conread position: 15-655
Cow position:
Alignm length: 648
Alignm identity: 387
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 150, 140

Conread position: 15-682
Cow position:
Alignm length: 671
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 15-683
Cow position:
Alignm length: 671
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 150

Conread position: 15-686
Cow position:
Alignm length: 673
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 470

Conread position: 15-695
Cow position:
Alignm length: 684
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 465

Conread position: 15-731
Cow position:
Alignm length: 724
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 270

Conread position: 15-732
Cow position:
Alignm length: 722
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 679, 711

Conread position: 16-692
Cow position:
Alignm length: 681
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 49

Conread position: 16-695
Cow position:
Alignm length: 683
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 146

Conread position: 16-695
Cow position:
Alignm length: 686
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 16-696
Cow position:
Alignm length: 687
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 16-723
Cow position:
Alignm length: 717
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 16-732
Cow position:
Alignm length: 725
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 50

Conread position: 17-516
Cow position:
Alignm length: 502
Alignm identity: 299
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 150, 145

Conread position: 17-586
Cow position:
Alignm length: 571
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 311

Conread position: 17-615
Cow position:
Alignm length: 605
Alignm identity: 362
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 65, 60

Conread position: 17-630
Cow position:
Alignm length: 618
Alignm identity: 365
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 70

Conread position: 17-653
Cow position:
Alignm length: 642
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 51

Conread position: 17-664
Cow position:
Alignm length: 652
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 133

Conread position: 17-691
Cow position:
Alignm length: 676
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 568, 558

Conread position: 17-692
Cow position:
Alignm length: 676
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-692
Cow position:
Alignm length: 676
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-692
Cow position:
Alignm length: 679
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 52

Conread position: 17-699
Cow position:
Alignm length: 685
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 144

Conread position: 17-699
Cow position:
Alignm length: 688
Alignm identity: 404
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 74, 62

Conread position: 17-699
Cow position:
Alignm length: 689
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 71

Conread position: 17-726
Cow position:
Alignm length: 715
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 82

Conread position: 17-732
Cow position:
Alignm length: 722
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 352

Conread position: 21-692
Cow position:
Alignm length: 672
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-732
Cow position:
Alignm length: 718
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 69

Conread position: 22-652
Cow position:
Alignm length: 635
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 68

Conread position: 22-653
Cow position:
Alignm length: 636
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 9

Conread position: 22-699
Cow position:
Alignm length: 682
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 23

Conread position: 25-699
Cow position:
Alignm length: 679
Alignm identity: 392
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 62

Conread position: 26-610
Cow position:
Alignm length: 588
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 387

Conread position: 26-731
Cow position:
Alignm length: 711
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 623, 616

Conread position: 31-612
Cow position:
Alignm length: 584
Alignm identity: 339
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 59

Conread position: 46-722
Cow position:
Alignm length: 683
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 44

Conread position: 47-699
Cow position:
Alignm length: 664
Alignm identity: 398
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 113, 123

Conread position: 73-700
Cow position:
Alignm length: 641
Alignm identity: 383
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 18

Conread position: 83-626
Cow position:
Alignm length: 544
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 87-731
Cow position:
Alignm length: 652
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 236

Conread position: 88-692
Cow position:
Alignm length: 607
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 229

Conread position: 89-695
Cow position:
Alignm length: 609
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 207

Conread position: 89-700
Cow position:
Alignm length: 615
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 72

Conread position: 89-700
Cow position:
Alignm length: 617
Alignm identity: 367
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 72

Conread position: 90-731
Cow position:
Alignm length: 646
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 604, 0

Conread position: 96-723
Cow position:
Alignm length: 636
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 64

Conread position: 97-655
Cow position:
Alignm length: 568
Alignm identity: 342
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 161, 48

Conread position: 110-731
Cow position:
Alignm length: 629
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 214

Conread position: 115-691
Cow position:
Alignm length: 578
Alignm identity: 346
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 473, 461

Conread position: 170-695
Cow position:
Alignm length: 527
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 233

Conread position: 191-695
Cow position:
Alignm length: 508
Alignm identity: 308
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 226, 211

Conread position: 215-536
Cow position:
Alignm length: 322
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 218-692
Cow position:
Alignm length: 477
Alignm identity: 292
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 118, 113

Conread position: 229-692
Cow position:
Alignm length: 467
Alignm identity: 293
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 188, 170

Conread position: 248-690
Cow position:
Alignm length: 446
Alignm identity: 285
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 61

Conread position: 254-712
Cow position:
Alignm length: 460
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 330

Conread position: 277-731
Cow position:
Alignm length: 460
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 310

Conread position: 305-723
Cow position:
Alignm length: 425
Alignm identity: 275
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 113, 13

Conread position: 332-695
Cow position:
Alignm length: 364
Alignm identity: 229
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 347-695
Cow position:
Alignm length: 352
Alignm identity: 217
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 65

Conread position: 431-701
Cow position:
Alignm length: 274
Alignm identity: 182
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 218, 211

Show alignments to all cow chromosomes.